Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00037 ATGGCTTCAGCAAGCGGAGCAGAGAAATCGTCGGTTCCGCCGCAGCCACAAATTCACAATTCGCGAACGAAGCCGAGCCACCAGAACATCGACTCCATGAGCAAAGCCATCGCCCAGTACACGGAGGACGCGAGGCTGCACGCGGTGTTCGAGCAGTCCGGCGAGTCTGGGAGGTCATTCGATTACTCCCAATCGGTTCGCATCACGTCGGAATCGGTTCGGGAGCAGCAGATAACGGCGTATCTCCTCAAAATCCAGCGCGGCGGCTTCATCCAGCCGTTCGGCTGCATGATCGCGGTCGACGAGCCCTCCTTCCGAATCCTGGGATACTCAGAGAACGCGCGCGACATGCTCGGCATTACGCCGCAGTCCGTTCCCTCTATCGACGACAAGCTCGAGGCCTTTGCGCTAGGCGCGGACGTCCGCACGCTATTCACTCACTCCAGTGCCCTTCTTCTCGAGAAGGCCTTCGCCGCGCGTGAAATTAGCCTCACGAACCCTATCTGGATCCATTCCCGAACCTCCGGTAAGCCTTTTTATGGCATCCTTCACCGGATTGACGTCGGAATCGTCATCGATTTGGAGCCCGCGCGCACGGAGGACCCAGCGCTTTCTATCGCCGGTGCCGTTCAGTCGCAGAAGCTCGCCGTGCGCGCGATTTCGCAGTTGCAGTCTCTCCCCGGCGGTGATGTTAAGCTTCTGTGTGACACTGTTGTTGAGAGTGTTAGGGAATTGACAAGGTACGATAGGGTTATGGTTTATAAGTTTCACGAGGATGAGCAAGGGGAGGTTGTTGCCGAGAGTAAGAGGCCTGATTTGGAGCCTTACATTGGTTTGCATTATCCTGCCACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTCCTGTGAGGGTGGTGCAGGATGAGGCTCTTGTGCAGCCTCTCTGTTTGGTTGGGTCAACGCTCAGGGCCCCCCATGGTTGTCATGCGCAGTACATGGCTAACATGGGGTCTATTGCGTCTTTGGTCATGGCTGTTATTATTAATGGAAATGACGAGGAAGCTGTTGGTGGCCGGAGTCCGATGAGGCTCTGGGGGCTTGTTGTTTGCCATCACACTTCTGCTAGGTGTATTCCTTTTCCCTTGAGGTATGCTTGTGAGTTTCTCATGCAGGCCTTTGGGCTGCAGTTAAACATGGAGCTTCAGTTGGCCGCACAATCGTTGGAGAAACGGGTTTTGAGGACGCAGACTCTGTTGTGCGATATGCTTCTTAGGGACTCGCCTACTGGCATTGTTACTCAGAGTCCTAGCATTATGGACTTGGTGAAGTGTGATGGGGCTGCTCTTTACTGCCAAGGGAATTATTATCCGTTAGGTGTGACTCCGACTGAGGCTCAGATAAGGGATATCATTGAGTGGTTATTGGCCTTCCATGGAGATTCGACTGGTTTAAGTACCGATAGTCTTGCTGATGCTGGGTATCCTGGTGCTGCCTTGCTCGGGGATGCGGTTTGCGGGATGGCAGTTGCTTATATCACCGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGGAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCCGAGGACAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCTTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGTAGCTTGCCATGGGAGAATGCGGAAATGGATGCAATTCACTCGTTGCAACTTATTCTACGTGACTCGTTTAGAGATACTGAGCATAGCAATTCTAAGGCTGTTGTGGATCCCCGTGTGGCAGAACTAGAGTTGCAAGGGGTTGATGAACTAAGTTCTGTGGCGAGAGAGATGGTTAGATTGATAGAAACAGCCACCGCTCCTATATTTGCGGTTGATATTGATGGCCACATAAATGGTTGGAATGCAAAGGTTTCAGAATTGACAGGACTTGCTGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCATGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAAGACGTTTCGCCCTGAACATCAAAATAAGGCAGTTTTTGTTGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTATGCACAGTCCAAATCCCTTGATCCCTCCCATTTTTGCATCGGACGATAATGCATGTTGCCTAGAGTGGAACACTGCCATGGAAAAACTTACAGGTTGGGGACGTGGGGATGTCATTGGGAAAATGTTAGTGGGAGAGGTTTTTGGTAGTTGCTGTCCGTTGAAGGGTTCAGATTCAATTACAAAGTTTATGATTGTCTTACACAATGCACTTGGTGGACAAGATACAGACAAATTCCCTTTCTCATTTCTTGATCGGCATGGAAAGTATATACAAACTTTCCTGACTGCCAATAAGAGAGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAAACTTCCTTTGCTAGGATGAAAGAGTTAGCTTATATTAGTCAAGGAGTGAAGAATCCTTTAAGTGGCATACGCTTTACGAATTCTCTTTTAGAGGCTACAAGCTTGACCGATGAGCAAAAGCAGTTTCTTGAGACCAGTGCTGCCTGTGAGAAGCAAATGTTAAAGATAATACGCGACATTGATCTTGAAAGCATCGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGGAATGTCATGAATGCAGTTGTTAGCCAAGTAATGTTACTGTTAAGAGAAAGAACTTTACAGTTGATTTGTGATATTCCAGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTTTTGGCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATATCGGATGGGCTCACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAACTGATTCAGGACATGTTCAATAACAGTCGGTGGGTGAGTCAAGAAGGTTTAGGGTTGAGCATGAGCAGGAAGATTCTAAAGGTAATGAACGGAGAAGTCCAGTATATCAGGGAAGCAGAACGGTGCTACTTTTTTATTCTTCTTGAACTCCCTGTGACGCGGAAAAACTCTAAAAAGGGTTAA 3396 0.4732 MASASGAEKSSVPPQPQIHNSRTKPSHQNIDSMSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSVRITSESVREQQITAYLLKIQRGGFIQPFGCMIAVDEPSFRILGYSENARDMLGITPQSVPSIDDKLEAFALGADVRTLFTHSSALLLEKAFAAREISLTNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTRYDRVMVYKFHEDEQGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEAVGGRSPMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITEKDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDTEHSNSKAVVDPRVAELELQGVDELSSVAREMVRLIETATAPIFAVDIDGHINGWNAKVSELTGLAVEEAMGKSLVHDLVFKESEETVDKLLSRALKGEEDKNVEIKMKTFRPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIMHSPNPLIPPIFASDDNACCLEWNTAMEKLTGWGRGDVIGKMLVGEVFGSCCPLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYIQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKAQRQQEKTSFARMKELAYISQGVKNPLSGIRFTNSLLEATSLTDEQKQFLETSAACEKQMLKIIRDIDLESIEDGSLELEKGEFLLGNVMNAVVSQVMLLLRERTLQLICDIPEEIKTLAVYGDQLRIQQVLADFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNNSRWVSQEGLGLSMSRKILKVMNGEVQYIREAERCYFFILLELPVTRKNSKKG 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00037 1131 Gene3D PAS domain 618 751 - -
Vium465g00037 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 198 IPR035965 -
Vium465g00037 1131 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 887 954 IPR036097 GO:0000155|GO:0007165
Vium465g00037 1131 SMART gaf_1 230 418 IPR003018 GO:0005515
Vium465g00037 1131 FunFam Phytochrome 961 1127 - -
Vium465g00037 1131 Pfam His Kinase A (phospho-acceptor) domain 902 962 IPR003661 GO:0000155|GO:0007165
Vium465g00037 1131 PRINTS Phytochrome signature 626 642 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 645 660 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Vium465g00037 1131 CDD PAS 768 876 IPR000014 -
Vium465g00037 1131 SMART pas_2 625 692 IPR000014 -
Vium465g00037 1131 SMART pas_2 756 826 IPR000014 -
Vium465g00037 1131 SMART pas_2 84 153 IPR000014 -
Vium465g00037 1131 ProSiteProfiles Histidine kinase domain profile. 905 1125 IPR005467 -
Vium465g00037 1131 Gene3D - 211 569 IPR029016 -
Vium465g00037 1131 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Vium465g00037 1131 PANTHER OS08G0260000 PROTEIN 75 960 - -
Vium465g00037 1131 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Vium465g00037 1131 Pfam Phytochrome region 421 595 IPR013515 GO:0006355|GO:0009584
Vium465g00037 1131 FunFam Phytochrome 770 878 - -
Vium465g00037 1131 Gene3D PAS domain 84 333 - -
Vium465g00037 1131 CDD HisKA 898 954 IPR003661 GO:0000155|GO:0007165
Vium465g00037 1131 CDD PAS 634 741 IPR000014 -
Vium465g00037 1131 FunFam Phytochrome 619 751 - -
Vium465g00037 1131 Pfam PAS fold 626 741 IPR013767 GO:0006355
Vium465g00037 1131 Pfam PAS fold 757 876 IPR013767 GO:0006355
Vium465g00037 1131 NCBIfam PAS domain S-box protein 630 745 IPR000014 -
Vium465g00037 1131 Gene3D - 881 961 - -
Vium465g00037 1131 FunFam Phytochrome 413 543 - -
Vium465g00037 1131 Pfam GAF domain 231 408 IPR003018 GO:0005515
Vium465g00037 1131 CDD HATPase_Phy-like 1009 1121 IPR044767 -
Vium465g00037 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 630 738 IPR035965 -
Vium465g00037 1131 SUPERFAMILY GAF domain-like 416 593 - -
Vium465g00037 1131 Gene3D - 962 1128 IPR036890 -
Vium465g00037 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1117 IPR003594 -
Vium465g00037 1131 Gene3D - 413 586 IPR043150 -
Vium465g00037 1131 PIRSF Phytochrome_conventional 15 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vium465g00037 1131 FunFam Phytochrome 879 960 - -
Vium465g00037 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 398 IPR016132 -
Vium465g00037 1131 ProSiteProfiles PAS repeat profile. 623 694 IPR000014 -
Vium465g00037 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 874 IPR035965 -
Vium465g00037 1131 Gene3D PAS domain 770 880 - -
Vium465g00037 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1119 IPR036890 -
Vium465g00037 1131 SMART HKATPase_4 1010 1123 IPR003594 -
Vium465g00037 1131 SUPERFAMILY GAF domain-like 210 405 - -
Vium465g00037 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Vium465g00037 1131 MobiDBLite consensus disorder prediction 1 30 - -
Vium465g00037 1131 Pfam PAS fold 80 197 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00037 Vium-Chr465 257290 264179 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00037 15 1123 Histidine Kinase Gene Family AT4G16250 75.067 0.0 1747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00037 K12121 - gmx:100799831 2101.25