Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00036 ATGGGAACCCCAGAAGAAGAAGATGAAGAAAAGCTTCTCAGAAAGATAGAACGGCTAGAAGCGGGTCACGCACACCTCAAGCAAGAAATGTCCAATTTCCAGCTCCTCCAAAACCACAGGTCTCATTCCAGGTTTGGTGCTGCTACGTCTAACCAACCCTCTTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCACTCTGTTCATGTTTTGGATCTTCAATGTCGCGTCATGTACTGGAACCCTAGTGCTGAGAATCTGTATGGTTATGCAGCAGAAGAGGTTCTTAGGCGGGATGGGATTGAGATGCTTGTGGATCCCAGGGATTTTGGTTTGGCCAATGATGTGTTCAACCATGTCAAAATGGGAGAGAGTTGGAGAGGGCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCTGTGTCAACCAATACACCTTTCTATGATGAAGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCACGGCCCTTTCTTGAATCCAGAATTCCCTTTCTAGGAGCAGAGAGTGCAGAACCTGTATCGAGTTCCAATGGTCGTAGGAGTAGCATTTCAGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCTTCGAAAATTTCAAATTTGGCTTCAAAGGTGAGTAACAAAGTTAAGTCTAGAATGAGGACAGGAGAATTTAGTGTCAATCGTGAAGGTGGGAGCGGAGAAAGTCGTCATTCTGAGCATAGTTTGTCGGACTCTGCTGTTTCTGACCAGAGAGAAGATGGTAATTCCAGAGGAGCTAGCACTCCCAGAGGAGATGTGCTAAAATCTCCTTTTGGTTTATTTTCTCATGCTGAAGAGAAATCCCAAGGGAAAACCATGAGGGACTCCAATGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATCCAAAAGAAAACATTGTCATGGCCTTGGAAGGCAAACGATCAGGAAGGATCTGAGGCAAGGAATGTTCAAGCTGCTTCACCTTGGTTGCAGGCTGACCAAGAGAATGAGTTGATTAATCAGAAGAATCTGTCTTCTGGGTTGAAGCCAGAAAGCCAAGCAGGCGAAAGCAATGGACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCGTTTGTTAATGTTAACAGCACAAGTAGTACCAGCAGCTGCGGGAGTGGTAGTAGTTCTGCACCCAATAATAAAGTGGATGTTGACTCCGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAGTTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTGTGGTATGGATCGGGTGTTACTGTTAAGGTTTTCTCAAAGCAAGAATATTCAGATGATTTGGTACTGTCCTTCAGACAAGAGGTTTCTGTCATGAAAAGACTTCGCCATCCAAATATTATTCTATTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATCGTGACAGAGTTTCTCCCACGGGGAAGCTTATTTCGTTTGCTTCAGAGAAACACATCCAAACTAGAGCGGAGACGGAGAGTTCATATGGCCGTGGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCGATCATCCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGGCTTTCCCGTCTTAAACATGAAACATATCTCACTACTAAGACAGGGAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCTGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTCACAACTGAAAAGATTCCTTGGGATACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGACTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGAGAGCTGCTGGCACAGTGATCCAGCTTGCCGACCAACATTCCAGGAACTGGTGGAAAGACTTAGAGAACTGCAGAGACAGTATGCAATTCAATTCCAGGCAGCTCGATCTGCCGAGGAAGGAACTCAAAAGGAGTTCTCTAGCAAATAG 2163 0.4415 MGTPEEEDEEKLLRKIERLEAGHAHLKQEMSNFQLLQNHRSHSRFGAATSNQPSSSSLHQNGNKYLNILQSMGHSVHVLDLQCRVMYWNPSAENLYGYAAEEVLRRDGIEMLVDPRDFGLANDVFNHVKMGESWRGQFPVKNKKGDRFYAVSTNTPFYDEDGSLVGVICVSCDSRPFLESRIPFLGAESAEPVSSSNGRRSSISDKLGLDSQQPLQVALASKISNLASKVSNKVKSRMRTGEFSVNREGGSGESRHSEHSLSDSAVSDQREDGNSRGASTPRGDVLKSPFGLFSHAEEKSQGKTMRDSNDQSEGKPIHKIITSKAETWIQKKTLSWPWKANDQEGSEARNVQAASPWLQADQENELINQKNLSSGLKPESQAGESNGPVNNEASGSWSSFVNVNSTSSTSSCGSGSSSAPNNKVDVDSDCLDYEILWEDLTVGEQIGQGSCGTVYHALWYGSGVTVKVFSKQEYSDDLVLSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLERRRRVHMAVDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIESCWHSDPACRPTFQELVERLRELQRQYAIQFQAARSAEEGTQKEFSSK 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00036 720 MobiDBLite consensus disorder prediction 374 397 - -
Vium465g00036 720 Gene3D PAS domain 74 175 - -
Vium465g00036 720 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 238 698 - -
Vium465g00036 720 ProSiteProfiles PAS repeat profile. 61 132 IPR000014 -
Vium465g00036 720 SMART serkin_6 440 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium465g00036 720 CDD PAS 76 173 IPR000014 -
Vium465g00036 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Vium465g00036 720 ProSiteProfiles Protein kinase domain profile. 440 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium465g00036 720 Coils Coil 9 29 - -
Vium465g00036 720 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 170 IPR035965 -
Vium465g00036 720 MobiDBLite consensus disorder prediction 249 270 - -
Vium465g00036 720 CDD STKc_MAP3K-like 446 692 - -
Vium465g00036 720 FunFam PAS domain-containing protein tyrosine kinase 433 517 - -
Vium465g00036 720 MobiDBLite consensus disorder prediction 299 316 - -
Vium465g00036 720 Gene3D Transferase(Phosphotransferase) domain 1 518 720 - -
Vium465g00036 720 NCBIfam PAS domain S-box protein 64 170 IPR000014 -
Vium465g00036 720 PRINTS Tyrosine kinase catalytic domain signature 553 571 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 PRINTS Tyrosine kinase catalytic domain signature 600 610 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 PRINTS Tyrosine kinase catalytic domain signature 619 641 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 PRINTS Tyrosine kinase catalytic domain signature 663 685 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 PRINTS Tyrosine kinase catalytic domain signature 514 527 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 MobiDBLite consensus disorder prediction 190 208 - -
Vium465g00036 720 Pfam PAS fold 65 170 IPR013767 GO:0006355
Vium465g00036 720 SMART pas_2 63 130 IPR000014 -
Vium465g00036 720 FunFam PAS domain-containing protein tyrosine kinase family protein 518 709 - -
Vium465g00036 720 MobiDBLite consensus disorder prediction 235 316 - -
Vium465g00036 720 MobiDBLite consensus disorder prediction 189 208 - -
Vium465g00036 720 Pfam Protein tyrosine and serine/threonine kinase 440 692 IPR001245 GO:0004672|GO:0006468
Vium465g00036 720 Gene3D Phosphorylase Kinase; domain 1 433 517 - -
Vium465g00036 720 SUPERFAMILY Protein kinase-like (PK-like) 427 692 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00036 Vium-Chr465 249552 255010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00036 10 709 MAP Kinase Kinase Kinase AT3G06620 58.179 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium465g00036 PK_Tyr_Ser-Thr 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00036 - - gmx:100815858 1207.2