Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00033 ATGCCTAATTTTCCTTCATCTTCTCCTTTTCTTCTTTCATCATTCATGGTGGCCATTCTCATTTCTTGCATCTCACATTCTGCCCTTGCTGGTAATCATGGAAAAATAATCGCTGACTCTCCTATGTTGACGCACAAGTTGGGAATTAATCGTACTATCAAAGTAGACATCAGTGGCCAGGGGGACTTCACAAGTATCCAAGATGCCATAGATTCCATTCCTGAAAAAAATTCTCAGTGGGTAATCGTTCATGTCAGGAAAGGACTATACAGAGAAAAGGTGCGCATACATAATAGGCCTTATATATTCCTGAGAGGGAATGGGCGAGGAAGAACTTCCATAACTTGGTCTCAGAGCTCTACAGACAACGTGGCTTCTGCCACCTTCAGAGTCGAATCACATGACGTCATTGTCTTTGGAATTAGCTTCCAGAATGAGGCACCTACGGGGATTGCTTACACCTCGCAAAACCAATCGGTGGCAGTATATGTGGCAGCAGACAAAGTGGCATTTTATCATTGTTCATTTTACAGTACTCACAACACTCTGTTTGATCAAAGAGGAAGACACTACTATGCTAATTGCTACATTCAAGGGTCAATTGATTTCATATTTGGTCGTGCCAGAACAATCTTCTATAACCCTGAAATATTCGTGATAGATGATAAAAGGTTAAAGGTGCAAGGTTCAATCACGGCTCATAATAGGGAAAATGCAGATGAGCTGAATGGATATATCTTCATCAAAGGCAGGGTTTATGGCACCGGTTTAGTTTACCTAGGAAGGGCGAAGGGTTCTTATTCTAGGGTGATTTTTGCTGAGACATATCTGTCAAAGACCATTGTCGCTCCGGGGTGGACCAATTGGAGCCATGATGGTAGCACAGAAAATATAGTGCATGCGGAGTACAATACCCGTGGACCTGGTTCTGTGAAGGATGGACGTGCTCCTTGGTCGCTGCAGCTAACTAAGCAAGAAGTTGAGCCCTTTTTATCCATTGATTATATTGATGGCAAAAATTGGTTGCCAGTATGGTTGTAA 1041 0.4256 MPNFPSSSPFLLSSFMVAILISCISHSALAGNHGKIIADSPMLTHKLGINRTIKVDISGQGDFTSIQDAIDSIPEKNSQWVIVHVRKGLYREKVRIHNRPYIFLRGNGRGRTSITWSQSSTDNVASATFRVESHDVIVFGISFQNEAPTGIAYTSQNQSVAVYVAADKVAFYHCSFYSTHNTLFDQRGRHYYANCYIQGSIDFIFGRARTIFYNPEIFVIDDKRLKVQGSITAHNRENADELNGYIFIKGRVYGTGLVYLGRAKGSYSRVIFAETYLSKTIVAPGWTNWSHDGSTENIVHAEYNTRGPGSVKDGRAPWSLQLTKQEVEPFLSIDYIDGKNWLPVWL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00033 346 FunFam Pectinesterase 48 346 - -
Vium465g00033 346 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Vium465g00033 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 50 342 - -
Vium465g00033 346 Pfam Pectinesterase 55 338 IPR000070 GO:0030599|GO:0042545
Vium465g00033 346 SUPERFAMILY Pectin lyase-like 49 344 IPR011050 -
Vium465g00033 346 Gene3D - 47 345 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00033 Vium-Chr465 228849 230475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00033 50 342 Carbohydrate Esterase AT5G47500 35.526 1.35e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00033 - - gmx:100792967 521.931