Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00027 ATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCTGCCGGCGATTTCTCCATGGCTGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGTCTTCACAAGAGTCACGAACAGTTGAAAGGTGTGTGCTGGTTCTTATCTGTGTGGGAGATCTTTTGGAGCCATTTGTATGTTGTTATTGTCTTAGGAGTGGTGTTTGTGCTGCAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAACAGGCGTTCCAGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCTCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATTCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTATTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCGGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCGGATCTGCGTAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTCATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCACTCGATCACTGA 1158 0.4974 MPEENARTASSGSATSEGSLPAISPWLSSRPTRSSRTRARSSPGPSAPSSESTTATAAPIVRVMFVITCSVISKSSQESRTVERCVLVLICVGDLLEPFVCCYCLRSGVCAAAILAESHSVVTSEVIQQAFQRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAIRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00027 385 Pfam Protein phosphatase 2C 135 332 IPR001932 -
Vium465g00027 385 ProSiteProfiles PPM-type phosphatase domain profile. 68 362 IPR001932 -
Vium465g00027 385 Gene3D - 108 370 IPR036457 -
Vium465g00027 385 MobiDBLite consensus disorder prediction 1 54 - -
Vium465g00027 385 CDD PP2Cc 124 362 IPR001932 -
Vium465g00027 385 PANTHER PROTEIN PHOSPHATASE 88 360 IPR015655 GO:0004722|GO:0006470
Vium465g00027 385 FunFam Probable protein phosphatase 2C 42 102 370 - -
Vium465g00027 385 SMART PP2C_4 51 360 IPR001932 -
Vium465g00027 385 SUPERFAMILY PP2C-like 116 363 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00027 Vium-Chr465 210297 217921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00027 111 376 PP2C-type Phosphatase Gene Family AT5G66080 59.398 2.45e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00027 K01102 - gmx:100814799 519.62