Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00026 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAACCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCTGCCGGCGATTTCTCCATGGCTGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAACAGGCGTTCCAGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCTCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATTCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTATTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCGGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCGGATCTGCGTAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTCATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCACTCGATCACTGA 1110 0.509 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESHSVVTSEVIQQAFQRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAIRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00026 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vium465g00026 369 Gene3D - 39 354 IPR036457 -
Vium465g00026 369 SMART PP2C_4 39 344 IPR001932 -
Vium465g00026 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
Vium465g00026 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Vium465g00026 369 Pfam Protein phosphatase 2C 70 316 IPR001932 -
Vium465g00026 369 PANTHER PROTEIN PHOSPHATASE 43 344 IPR015655 GO:0004722|GO:0006470
Vium465g00026 369 FunFam Probable protein phosphatase 2C 42 36 354 - -
Vium465g00026 369 CDD PP2Cc 46 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00026 Vium-Chr465 210297 218094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00026 1 366 PP2C-type Phosphatase Gene Family AT4G38520 59.367 3.20e-159 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00026 K01102 - gmx:100814799 699.508