Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00025 ATGCTCCAGGCATTGATGAGTCTTATCGCGCGCTGTTGGAAACCGTTCGGGCTCGGTGACGACGCCAATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCTGCCGGCGATTTCTCCATGGCTGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGTTGTGCTTTTCAGTCTTCACAAGAGTCACGAACAGTTGAAAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAACAGGCGTTCCAGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCTCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATTCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTATTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCGGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCGGATCTGCGTAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTCATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCACTCGATCACTGA 1152 0.5052 MLQALMSLIARCWKPFGLGDDANAGRECKDGLLWFRDIGRFAAGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDCSRYVCDNLFRNLQVVLFSLHKSHEQLKAILAESHSVVTSEVIQQAFQRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAIRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00025 383 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vium465g00025 383 SUPERFAMILY PP2C-like 54 361 IPR036457 -
Vium465g00025 383 PANTHER PROTEIN PHOSPHATASE 43 358 IPR015655 GO:0004722|GO:0006470
Vium465g00025 383 ProSiteProfiles PPM-type phosphatase domain profile. 45 360 IPR001932 -
Vium465g00025 383 Pfam Protein phosphatase 2C 70 330 IPR001932 -
Vium465g00025 383 CDD PP2Cc 46 360 IPR001932 -
Vium465g00025 383 Gene3D - 39 368 IPR036457 -
Vium465g00025 383 SMART PP2C_4 39 358 IPR001932 -
Vium465g00025 383 FunFam Probable protein phosphatase 2C 42 36 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00025 Vium-Chr465 210297 218098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00025 1 380 PP2C-type Phosphatase Gene Family AT4G38520 57.506 9.51e-156 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00025 K01102 - gmx:100814799 689.878