Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium465g00020 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCCTTCTCTTCTTCCTGCGACCACAAGGCCTCGCCCTTCGGCTTCCTCGACCTGCTCGGCGTGCACGACTACCACGCTCCGCTATTCGATTGGCCCCCCTCCGCTGCGCCGTCGCGGGCGAGCTCCAACGTGCCGGACTCCTCCGAGGTGCTGAACACTCCCGCGTCGCCCAACCTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCACGACCGCCAGCAGGGCGGAGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCCGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTAAAGAAGCGAGTCGAGCGTTCCTCCGACGACCCTTCCATCGTGGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGTGGGTTGGGACATTCCGGCTCCTCACACTTCGTCCTGCCACATCAACACCAACACCAACACCAACACCAAGCTTCGCCTTTGATATATAACTCCAACCCTCCTTTTGTAAACTCCGCCAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCAGGACCACGCGAACCGTCAAGGATTCGGGCATGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA 1056 0.5625 MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDHKASPFGFLDLLGVHDYHAPLFDWPPSAAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATATTASRAEQSGKGGFEHEEAEAEEEEEGGNGGREDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHSGSSHFVLPHQHQHQHQHQASPLIYNSNPPFVNSASNFMNTTSFGGFGQDHANRQGFGHEALLRDNGLLQDIIVPSQVRKEEKD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium465g00020 351 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 285 IPR044810 GO:0003700
Vium465g00020 351 MobiDBLite consensus disorder prediction 82 127 - -
Vium465g00020 351 MobiDBLite consensus disorder prediction 1 42 - -
Vium465g00020 351 MobiDBLite consensus disorder prediction 14 36 - -
Vium465g00020 351 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium465g00020 351 FunFam WRKY transcription factor 57 175 249 - -
Vium465g00020 351 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium465g00020 351 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium465g00020 351 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium465g00020 351 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium465g00020 351 MobiDBLite consensus disorder prediction 81 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium465g00020 Vium-Chr465 131060 133352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium465g00020 159 348 WRKY Transcription Factor Family AT5G49520 56.219 2.40e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium465g00020 WRKY 4.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium465g00020 - - gmx:100812252 409.068