Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4654g00021 ATGACTCAAAAATATGGTCCGCACTCTGAAGTTTCTATTCAATTCAAAATTGAAAGTGGAAAAAGAATACCTTGTGTGATTGAAGTGAAGAGTGTGAAGATGGCGATGGAAGTGGAGAACAATCACAATCAACAATTAGGGTTTCCGTTCTGGAAACCGCTCCGTCGCAAGTTCGGGCCCGACTCTCCTTTCTTCGCTCCCGGCAATCTCGAACGAGAACTTCTTGCCAAACAGGTTGCTTTGGAATTGACAGAAGAGAAGGAACAGCTTGAGAAATGGATGCAAGAGGAAGAAGGAAGGGAAATCTTTTGTCCCATTGTTGGCTGTGGTGCACGCTTGACTTCAATGGATGACTTCGAGAATCACTATAATGCAAGGCATACTGCATCTTGTTCTGTGTGCTTTAGAGTTTACCCAACGTCTCGGTTGCTCAGCATACATGTATCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGTATGAATGCTTGGTGGAAAAGTGTGGTTTGAAATTCAAAAGCTACAATCGTAGGCATCAGCATCTGGTTGACAAGCATAAATTTCCCACCTCATTTGAGTTTTTCAAGAAGGCTAAACCTTCAAAGAAACAGAGATTGAAGTCCCAACAAAAAAAATCTGTTCCTAAGGAGAAGGATGCAGGAATGATGGAAGTGGAAAACGCAACCGTGGATGACCTTGTTTCAGCAGTCTCTAAACTGAGCACTTCTGACTCCACCCCTTCAAATATCAGCTTTGGTCGCCGCAGCAAAGGCTTGTCATTCGTCCCTCGAACTGTTCAGCGCAGAGATCAATCAAACCCAGCAGCATCTGGGACAAAGAGATAA 864 0.4363 MTQKYGPHSEVSIQFKIESGKRIPCVIEVKSVKMAMEVENNHNQQLGFPFWKPLRRKFGPDSPFFAPGNLERELLAKQVALELTEEKEQLEKWMQEEEGREIFCPIVGCGARLTSMDDFENHYNARHTASCSVCFRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVEKCGLKFKSYNRRHQHLVDKHKFPTSFEFFKKAKPSKKQRLKSQQKKSVPKEKDAGMMEVENATVDDLVSAVSKLSTSDSTPSNISFGRRSKGLSFVPRTVQRRDQSNPAASGTKR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4654g00021 287 MobiDBLite consensus disorder prediction 216 231 - -
Vium4654g00021 287 PANTHER UNCHARACTERIZED 45 275 IPR039258 -
Vium4654g00021 287 SMART c2h2final6 167 192 IPR013087 -
Vium4654g00021 287 SMART c2h2final6 129 152 IPR013087 -
Vium4654g00021 287 SMART c2h2final6 102 127 IPR013087 -
Vium4654g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 131 152 IPR013087 -
Vium4654g00021 287 MobiDBLite consensus disorder prediction 245 287 - -
Vium4654g00021 287 MobiDBLite consensus disorder prediction 271 287 - -
Vium4654g00021 287 MobiDBLite consensus disorder prediction 205 231 - -
Vium4654g00021 287 MobiDBLite consensus disorder prediction 245 261 - -
Vium4654g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 104 127 IPR013087 -
Vium4654g00021 287 Coils Coil 76 100 - -
Vium4654g00021 287 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4654g00021 34 283 C2H2 Transcription Factor Family AT5G14140 61.923 1.59e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4654g00021 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4654g00021 - - gmx:100819557 429.098