Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4653g00001 ATGGCGACAGCGGCGGAGCTACAAGCGACGACCTACGGGTGCCACGAATGCGATATGAGCGTGTCCCTTACGCTCCTTCCCTCGCCTCTCCTCTGTCTCCACTGCCACACCTCCTTCCTCGAACTAATGGCCTCTCCCTTCTCCCAAAACAATGTCGAATCACCCCTCTTTGGCGTCGTTTTCCACGAAGCGCTCTTACTCCTCTCCCCCAAGCCCCTCCCCGCCAAACCCTGCCCTCTCCCCTTCGTCAACGTCACACCCTCGCTCCTTTCCGCGCTCGACCCCAATGGCGTTGTTTTCTGCGTTGTGTGCAAAGACCAAATTTCCCTCTTTGACGCCGAGGCCAAACAGTTGCCTTGCAAACATCTCTACCATGTCGGTTGCATCACACCGTGGCTCGACCTCCACATGCCGTGCCCGTTGTGCAGGCTCCGCCTTGAGGAAGAGGGGGCACAGGAGGAGGAAGACGAAGGTGACGACGTGGTGAGGGAGATCCGGAGGGAGCCTTGA 510 0.5902 MATAAELQATTYGCHECDMSVSLTLLPSPLLCLHCHTSFLELMASPFSQNNVESPLFGVVFHEALLLLSPKPLPAKPCPLPFVNVTPSLLSALDPNGVVFCVVCKDQISLFDAEAKQLPCKHLYHVGCITPWLDLHMPCPLCRLRLEEEGAQEEEDEGDDVVREIRREP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4653g00001 169 SMART ring_2 101 142 IPR001841 -
Vium4653g00001 169 MobiDBLite consensus disorder prediction 150 169 - -
Vium4653g00001 169 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vium4653g00001 169 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Vium4653g00001 169 SUPERFAMILY RING/U-box 95 147 - -
Vium4653g00001 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 144 - -
Vium4653g00001 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 168 IPR013083 -
Vium4653g00001 169 Pfam Ring finger domain 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4653g00001 Vium-Chr4653 10572 11081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4653g00001 80 146 C3H Transcription Factor Family AT3G60080 42.857 6.12e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4653g00001 K11982 - gmx:100775530 191.045