Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4651g00003 ATGTACGAAGAAACTACCTACGAGTCTGATTTGGCTCTTTTGGATTCCATTCGCCGCCACTTACTCGGGGACTCCGAGGATCTCAAATTCGGACCCCCGATTGTTAACTCGGGCAACACTTCCCTTTACTCTCGGAGCTCCAGTTTCGGTAGGTTATACCCGTGTTTGAGTAACGACTGGGGAGAACTTCCTCTCAAGGAAGATGATTCGGAGGACATGGTGCTCTACGGTGTTCTTCGTGATGCCGTCAACTTAGGGTGGGTCCCTTCTCTCAACGCGGACTCACCGGACAGTTTTTCTTCGGGTTTCGTCCCGGAAGTGACCGTGAAACCCGAACCGGATGTATTTCCGGCACCGGAACCTGTTTTCACTCCCCCGGTGGTTCAAAGGGATGCACCGGCGGTTGTTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGACAGCGGCCGTGGGGAAAATTCGCGGCGGAAATCCGCGACCCGGCTAAAAACGGGGCTCGGGTTTGGCTCGGAACGTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGACCGAGCCGCGTACAGAATGCGCGGGTCTCGGGCTTTGTTGAATTTCCCGCTTCGGATTAATTCGGGTGAGCCCGAACCGGTTCGGTTTTCGTCGAAGCGAGCGTCGCCGGAGCCTTCGTCTTCGTCGGAGAGTGGATCGTCGGCTAAGAGGCGGAAGAAAGTGGTGGGGTCGACTGTGACGGCTCCAAGTGGATTGAGAACAGGGCAAGTGGGAAGTCAAGTGGCTCAGTGCACACGTGCGGAACAGTTGTTGGTTAACTAA 813 0.5658 MYEETTYESDLALLDSIRRHLLGDSEDLKFGPPIVNSGNTSLYSRSSSFGRLYPCLSNDWGELPLKEDDSEDMVLYGVLRDAVNLGWVPSLNADSPDSFSSGFVPEVTVKPEPDVFPAPEPVFTPPVVQRDAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRFSSKRASPEPSSSSESGSSAKRRKKVVGSTVTAPSGLRTGQVGSQVAQCTRAEQLLVN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4651g00003 270 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Vium4651g00003 270 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Vium4651g00003 270 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Vium4651g00003 270 MobiDBLite consensus disorder prediction 208 256 - -
Vium4651g00003 270 PANTHER DNA-BINDING DOMAIN 136 232 IPR044808 GO:0003700|GO:0009873
Vium4651g00003 270 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Vium4651g00003 270 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
Vium4651g00003 270 FunFam Ethylene-responsive transcription factor 2 141 201 - -
Vium4651g00003 270 Gene3D AP2/ERF domain 141 203 IPR036955 GO:0003700|GO:0006355
Vium4651g00003 270 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Vium4651g00003 270 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4651g00003 Vium-Chr4651 16114 17583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4651g00003 8 269 AP2-EREBP Transcription Factor Family AT4G17500 53.103 7.81e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4651g00003 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4651g00003 K09286 - gmx:100819649 387.497