Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4651g00002 ATGGCTTCCTTAACCCTCCTTATACCAACACTTATCTGTCTTCAATTTCATCTTCTTTTATTAGCTTTTGCAGAAGTTAATATCGGTTCCACACTTTCCACCGACAACAATGGAGTGTGGCGTTCACCTTCTGGTCATTTTGCATTTGGGTTTCGTGCATTGAATAATAACACGGATCCGAATACAAAGCTGTTCATGGTTGCCATATGGTACGACATGATACCCGACAAGACCGTTGTTTGGTGTTTAAAAGCAGACAACAAACTTGCAACAGCACCAGCGGGATCACAGGTTCGGATTACTTCGGCGGGACTAACACTGTCGGGTCCCGAAGGAGATTCCATATGGGCATCAAACCTGGCAAGTGTTGTCTCCGTAGGTTCTATGCTTGATACTGGCAACTTTGTTCTACTGACTGGGAACTCTGAAAAGGTGTGGCAAAGTTTTGAGCACCCCACCGACACGTTGTTGCCTACCCAATCTCTCCAACCTGAAGGCACGCTTACATCTCGATTAACAGACACTAATTACACGACTGGAAGGTTCCAACTTTATTTTAAAGAGGGTAATGTCTTACTGAGTCCTCTTGCATGGCCTTCTCCACTGCTTTACGACTCTTACTATGTGTTGGATGCCTCTGGTGCTGCTTCAACGTTACTGTTCAATGAGTCGGGGAATATCTACGTAAACACCACAAATGGTACTATAATCCAACCTCAAGGTTCCCAATGGAATATCTCGGATCTCGATCCTGAGGTGAATTACTACAGAGCAACGCTCGACTTTACTGGAGTTTTCACCCAGTATTATCATCCACGGAACAACACTGCTCAGTCAGGGTGGAGAATCATGAGGTATGTTCCTGACAACGTTTGCAATGCAATAGCTTATCAGTATGGTAGCGGTTCCTGTGGCTATAATAGCTACTGCTCCATGGAAAATCAGAGGCCTACCTGCAAATGCCCTTATGGGTATTCGCTGTTGGATCCGAGTAATCAATTTGGTGGATGCCAACCCAATTTCACCCTTGCTTGTGGAGCTGATGTTCAAACACCGCCAGAAGAACTATATGAAATGCATGCATCTCAAGATTTTAATTTTCCTCAGGGGGATTATGAAAGGATACAACCTTACTCTAAGCAGGAATGCCAGCAGTTTTGCCTGCAGGATTGCAGGTGTGCTATGGCCGTTTCAGGGGGCGATACTTGTTGGATGAAGAGATTTCCCCTTGGTAACGGTAGAAAACTACCCGTCACAGATCAACATGTTGTCTATATCAAAACAAGAGTTGTTCGCGACTTTTATACAGGTGCAAACGGGGAACCTTCTCCTCCCCCGGATTCAAAGATAGAACATGATTCTAAGCTGTTTCTTTTGGGGCCGCTAATTGGTTCTCTAGTCCTTAACAGTATTCTCTTTGCTACAGTTGCTTTGTTTATTCTCAAGAAGCAGAAAGTGAATAGGGTTTCCAAAGCCGCCCCTAGTCCTTTGGAAACGAATTTGCATTCGTTTACTTATGAAAATTTGAAAAAGGCCACAGAGAATTTTCAGGAGGAAATAGGCAGAGGTTCTTATGGCATTGTTTACAAAGGACAACTAGAAGCAGGTTCTTCTCATGTGATTGCTGTGAAGAGATTGGACAGATTGGTAGACGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATCGGTAGAACCTGCCACAAAAATCTGGTCAGGTTAATCGGATTTTGTGACGAGGGAATCAATAGAATACTGGTGTACGAGTTCATGAGCAACGGCAGTCTTGCAGACATCCTGTTTGGGAAATCCAAACCCAGATGGAATGTAAGAGTTGGATTTGCTTTGGGGATTGCGAGAGGATTGGTATACTTGCACGAAGAGTGTGAGACTCCCATTATTCATTGTGATATAAAACCTCAAAATATACTGATAGACGAGTATTTCAATCCAAAGATATCAGACTTTGGGTTGGCCAAGTTGTTGCTGTCTGAGCAAAGTAGAACGATCACAATGATCCGAGGAACACGAGGATACGTGGCTCCTGAATGGTTTAAGAATGTTGCGGTGACGGTTAAAGTGGATGTTTACAGCTTTGGTGTAATGCTGTTGGAAATAATTTGCAGCAGAAGAAGTGTGTTGATGATGGAGCCTGGGGAAGAAGAGAAGGCAGTGCTGACAGATTGGGCTTGTGATTGCTTTGTGGAAGGAAGAATAGATGTTCTTGTGGAGAATGATGAAGAGGCCTTATCTGACTATGTGAGGCTGCAAAAATGGGTGAAAATTGCAATATGGTGCATTCATGAGCAACCTCAGATGAGACCAACAATGGGGATTGTCGTGCAAATGCTCGAAGGCTTGGTTGAAGTTCCTAACCCACCATCTCTCATGCGTAGTTGA 2403 0.4382 MASLTLLIPTLICLQFHLLLLAFAEVNIGSTLSTDNNGVWRSPSGHFAFGFRALNNNTDPNTKLFMVAIWYDMIPDKTVVWCLKADNKLATAPAGSQVRITSAGLTLSGPEGDSIWASNLASVVSVGSMLDTGNFVLLTGNSEKVWQSFEHPTDTLLPTQSLQPEGTLTSRLTDTNYTTGRFQLYFKEGNVLLSPLAWPSPLLYDSYYVLDASGAASTLLFNESGNIYVNTTNGTIIQPQGSQWNISDLDPEVNYYRATLDFTGVFTQYYHPRNNTAQSGWRIMRYVPDNVCNAIAYQYGSGSCGYNSYCSMENQRPTCKCPYGYSLLDPSNQFGGCQPNFTLACGADVQTPPEELYEMHASQDFNFPQGDYERIQPYSKQECQQFCLQDCRCAMAVSGGDTCWMKRFPLGNGRKLPVTDQHVVYIKTRVVRDFYTGANGEPSPPPDSKIEHDSKLFLLGPLIGSLVLNSILFATVALFILKKQKVNRVSKAAPSPLETNLHSFTYENLKKATENFQEEIGRGSYGIVYKGQLEAGSSHVIAVKRLDRLVDEREKEFRTELSSIGRTCHKNLVRLIGFCDEGINRILVYEFMSNGSLADILFGKSKPRWNVRVGFALGIARGLVYLHEECETPIIHCDIKPQNILIDEYFNPKISDFGLAKLLLSEQSRTITMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRRSVLMMEPGEEEKAVLTDWACDCFVEGRIDVLVENDEEALSDYVRLQKWVKIAIWCIHEQPQMRPTMGIVVQMLEGLVEVPNPPSLMRS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4651g00002 800 FunFam S-receptor-like serine/threonine-protein kinase 483 591 - -
Vium4651g00002 800 Gene3D - 27 190 - -
Vium4651g00002 800 SUPERFAMILY Protein kinase-like (PK-like) 494 786 IPR011009 -
Vium4651g00002 800 SMART blect_4 31 152 IPR001480 -
Vium4651g00002 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 169 IPR036426 -
Vium4651g00002 800 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 31 796 - -
Vium4651g00002 800 Gene3D Transferase(Phosphotransferase) domain 1 592 791 - -
Vium4651g00002 800 FunFam Serine/threonine-protein kinase 153 295 - -
Vium4651g00002 800 ProSiteProfiles Protein kinase domain profile. 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00002 800 ProSitePatterns Protein kinases ATP-binding region signature. 520 544 IPR017441 GO:0005524
Vium4651g00002 800 ProSiteProfiles Bulb-type lectin domain profile. 23 150 IPR001480 -
Vium4651g00002 800 CDD STKc_IRAK 520 788 - -
Vium4651g00002 800 Pfam Protein kinase domain 517 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00002 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vium4651g00002 800 PIRSF SRK 1 800 IPR024171 GO:0004674
Vium4651g00002 800 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 793 - -
Vium4651g00002 800 Gene3D Phosphorylase Kinase; domain 1 477 591 - -
Vium4651g00002 800 SMART serkin_6 514 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00002 800 Pfam D-mannose binding lectin 78 163 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4651g00002 Vium-Chr4651 8162 10689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4651g00002 500 787 Receptor kinase-like Gene Family AT1G60800 42.034 6.03e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4651g00002 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4651g00002 - - gmx:100789263 1151.35