Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4651g00001 TACGACTCTTACTATGTGTTGGATGCCTCTGGTGCTGCTTCAACGTTACTGTTCAATGAGTCGGGGAATATCTACGTAAACACCACAAATGGTACTATAATCCAACCTCAAGGTTCCCAATGGAATATCTCGGATCTCGATCCTGAGGTGAATTACTACAGAGCAACGCTCGACTTTACTGGAGTTTTCACCCAGTATTATCATCCACGGAACAACACTGCTCAGTCAGGGTGGAGAATCATGAGGTATGTTCCTGACAACGTTTGCAATGCAATAGCTTATCAGTATGGTAGCGGTTCCTGTGGCTATAATAGCTACTGCTCCATGGAAAATCAGAGGCCTACCTGCAAATGCCCTTATGGGTATTCGCTGTTGGATCCGAGTAATCAATTTGGTGGATGCCAACCCAATTTCACCCTTGCTTGTGGAGCTGATGTTCAAACACCGCCAGAAGAACTATATGAAATGCATGCATCTCAAGATTTTAATTTTCCTCAGGGGGATTATGAAAGGATACAACCTTACTCTAAGCAGGAATGCCAGCAGTTTTGCCTGCAGGATTGCAGGTGTGCTATGGCCGTTTCAGGGGGCGATACTTGTTGGATGAAGAGATTTCCCCTTGGTAACGGTAGAAAACTACCCGTCACAGATCAACATGTTGTCTATATCAAAACAAGAGTTGTTCGCGACTTTTATACAGGTGCAAACGGGGAACCTTCTCCTCCCCCGGATTCAAAGATAGAACATGATTCTAAGCTGTTTCTTTTGGGGCCGCTAATTGGTTCTCTAGTCCTAAACAGTATTCTCTTTGCTACAGTTGCTTTGTTTATTCTCAAGAAACAGAAAGTGAATAGGGTTTCCAAAGCCGCCCCTAGTCCTTTGGAAACGAATTTGCATTCGTTTACTTATGAAAATTTGAAAAAGGCCACAGAGAATTTTCAGGAGGAAATAGGCAGAGGTTCTTTTGGCATTGTTTACAAAGGACAACTAGAAGCAGGTTCTTGTCATGTGATTGCTGTGAAGAGATTGGACAGATTGGTAGACGAACGAGAGAAAGAATTTAGGACTGAATTGAGTTCCATCGGTAGAACCTGCCACAAAAATCTGGTCAGGTTAATCGGATTTTGTGACGAGGGAATCAATAGAATATTGGTGTACGAGTTCGTGAGCAACGGCAGTCTTGCAGACATCCTGTTTGGGAAATCCAAGCCCAGATGGAATGTAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTATACTTGCACGAAGAGTGTGAGACTCCCATTATTCATTGTGATATAAAACCTCAAAATATACTGATAGACGAGTATTTCAATCCAAAGATATCAGACTTTGGGTTGGCCAAGTTGTTGCTGTCTGAGCAAAGTAGAACGATCACAATGATCCGAGGAACACGAGGATACGTGGCTCCTGAATGGTTTAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGCTTTGGTGTAATGCTGTTAGAAATAATTTGCAGCAGAAGAAGTGTGTTAACGATGGAGCCTGGGGAAGAAGAGGAAGAAGAGAAGGCAGTGCTAACAGATTGGGCTTGTGATTGCTTTGTGGAAGGGAGAATAGATGTTCTTGTGGAGAATGATGAAGAGGCCTTATCTGACTATGTGAGGCTACAAAAATGGGTGAAAATTGCAATATGGTGCATTCATGAGCAACCTCAGATGAGACCGACAATGGGGATTGTCATGCAAATGCTCGAAGGCTTGGTTGAAGTTCCTAACCCACCATCTCTCATGCGTAGTTGA 1803 0.4332 YDSYYVLDASGAASTLLFNESGNIYVNTTNGTIIQPQGSQWNISDLDPEVNYYRATLDFTGVFTQYYHPRNNTAQSGWRIMRYVPDNVCNAIAYQYGSGSCGYNSYCSMENQRPTCKCPYGYSLLDPSNQFGGCQPNFTLACGADVQTPPEELYEMHASQDFNFPQGDYERIQPYSKQECQQFCLQDCRCAMAVSGGDTCWMKRFPLGNGRKLPVTDQHVVYIKTRVVRDFYTGANGEPSPPPDSKIEHDSKLFLLGPLIGSLVLNSILFATVALFILKKQKVNRVSKAAPSPLETNLHSFTYENLKKATENFQEEIGRGSFGIVYKGQLEAGSCHVIAVKRLDRLVDEREKEFRTELSSIGRTCHKNLVRLIGFCDEGINRILVYEFVSNGSLADILFGKSKPRWNVRVGFALGIARGLVYLHEECETPIIHCDIKPQNILIDEYFNPKISDFGLAKLLLSEQSRTITMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRRSVLTMEPGEEEEEEKAVLTDWACDCFVEGRIDVLVENDEEALSDYVRLQKWVKIAIWCIHEQPQMRPTMGIVMQMLEGLVEVPNPPSLMRS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4651g00001 600 Pfam Protein kinase domain 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00001 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vium4651g00001 600 Gene3D Phosphorylase Kinase; domain 1 274 388 - -
Vium4651g00001 600 ProSiteProfiles Protein kinase domain profile. 311 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00001 600 FunFam S-receptor-like serine/threonine-protein kinase 280 388 - -
Vium4651g00001 600 Gene3D Transferase(Phosphotransferase) domain 1 389 593 - -
Vium4651g00001 600 SMART serkin_6 311 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4651g00001 600 SUPERFAMILY Protein kinase-like (PK-like) 291 586 IPR011009 -
Vium4651g00001 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 389 593 - -
Vium4651g00001 600 CDD STKc_IRAK 317 588 - -
Vium4651g00001 600 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 12 596 - -
Vium4651g00001 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4651g00001 Vium-Chr4651 4 1943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4651g00001 297 587 Receptor kinase-like Gene Family AT1G60800 41.275 7.16e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4651g00001 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4651g00001 - - gmx:100775269 890.567