Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4650g00001 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGGCAACAACTCTTCTGTCCTGTCAACGGGATGCCAAAGAAGCCCTTATACTCCAGGAAATGAAGAGAAAACTCCAGAACCAAAGTCAAGATGGAATCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTATTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTCCGCCACATCCAAAACTCAAAGAAACACAACACAGAAACACAACCAAACTCACTTTCTCTCTCTCAAATCATACCACCTTCAACCTCATCCTCTTCCTCTGACAAATCCTCCTCAAAAGAATTAGTGCACCAAAATGCGATCTCCTTTGGATTCTCAAATGTCAATGATGCACTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTACAGTCTCACAACTACAATAACACCGCTTTGCTGCCACCAGCGATCGAGTCTTTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTAATAGTTAACGATACCATCACAACGCATGGGTTTTCTCTCCCTCAGTTCTCCAACAATATCATGCAATCTCAACCACAGTGTCAACCAAAGGTTGGACCCAGCAGTAGTCTTTTCCTCAACGAGATCATGAACCAGGAAAAGGCATTAAAATCAATGCACCGTCAACAACTTAGCTCCCATCCGACTTCATCTTCAACCACAACCGTTGCTCCCGCAATCTCAACTCTTCCATGTCCAATCACCCAGCTTCAAGGTGTTGGTGTTGAGGTTACAGCAGATAGAGAAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTCGGAGATGAAGCCGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGATGACTGGGGCATTACCCTCCACCCACTGCAGCATGGTGCTTACTATTATCTGATATAA 1107 0.4535 MSSSNKHWPSMFKSKPCNSHNQWQHGNNSSVLSTGCQRSPYTPGNEEKTPEPKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKKHNTETQPNSLSLSQIIPPSTSSSSSDKSSSKELVHQNAISFGFSNVNDALPNSPTASVNQTYLQSHNYNNTALLPPAIESFSFPLHNNGQGVIVNDTITTHGFSLPQFSNNIMQSQPQCQPKVGPSSSLFLNEIMNQEKALKSMHRQQLSSHPTSSSTTTVAPAISTLPCPITQLQGVGVEVTADREKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHGAYYYLI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4650g00001 368 MobiDBLite consensus disorder prediction 124 154 - -
Vium4650g00001 368 MobiDBLite consensus disorder prediction 121 154 - -
Vium4650g00001 368 CDD homeodomain 52 114 IPR001356 GO:0003677
Vium4650g00001 368 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 368 IPR044557 GO:0003700|GO:0050793
Vium4650g00001 368 SUPERFAMILY Homeodomain-like 47 116 IPR009057 -
Vium4650g00001 368 SMART HOX_1 51 118 IPR001356 GO:0003677
Vium4650g00001 368 Gene3D - 53 119 - -
Vium4650g00001 368 MobiDBLite consensus disorder prediction 1 60 - -
Vium4650g00001 368 MobiDBLite consensus disorder prediction 1 44 - -
Vium4650g00001 368 FunFam WUSCHEL-related homeobox 11 53 120 - -
Vium4650g00001 368 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Vium4650g00001 368 Pfam Homeodomain 53 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4650g00001 Vium-Chr4650 9589 11650 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4650g00001 1 368 Wox Gene Family AT2G33880 41.805 1.35e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium4650g00001 Homeodomain 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4650g00001 - - gmx:100777643 501.901