Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4649g00007 ATGGCAGAAGATATGAAAATTGATCAAATTGTGGAAGTTCCTGATACCCCAGATAGAATAATTGTGAGGGGTGATGATCAGAAACGTTTATGTAATCCTGAGAAGAGGAGCAGAGCTTTTAATGCTGCAGTTGAAATGAAGAATAATTTGTGTACTACATTGTCCCCGTCAGAAAAATCTTATACTTCTCAAAATGCTCCCATCTTTAGGAGAGGCCAAACAATGCATTCTAGTGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATATACTCCAAGTTTTCTTCTAAATCATCTCACCGTGATATTTCTGTTTTAGATTTGACTGAAGATAATGGACCGAGCCAACAACTGAAACCAGCTTTCTCACTTGGTGCATCAAGAGATCATGCAACTGAAGACAAGAAAGCACCCAAAGCAACTATTGGGAACTCTTTGTTGCCAGCCATTTCAGATTCTTCTGTTACATCTAGAAATCCCTTCACTGGAAAGTGTAAACTTCCAGGTTCTAATACATCTGTGGATCGTGGCAAGGGTATTTCTCTGTCTCAGGATTCTCAATCCCAAAATGATAAGCAAGTGTCTTTGCCTCCATTTGTTTCCAGCTCTCCACGAGGTAGAGGGAACAAGAGATTGGTTCGAAATGGGTGTATTTTACCTGATAATATTGCAACAAGGGCTAAACAATTAGCTGAACAGAGACACCTTCAAAATGAAGATGTTGAACAGAGCCATGCTGATCGTGCGCTTTCTAGCAATGCAGTGTCACCAAATAGTGTTCATGACATAGTTGCTAGAGAGAGGCGCAATGGTAAAGTTAAAGGAAAGGAAGTTCTTATTTCTCCTCCATTCAGTGGACGCAGTGCTGGAACTTTTTGCGCTGCCAACAGCCCTGTCATCAATCATGAAGAGGTCACTGGTACCAATAATGATACAAGAAACTCACTTCAATACCCTGGAGGACAAGGTGGTTGGAGAACTACTCGTAATTACCGGAATGCTAATCAGCACACGTATGATGAGCATCGCATGACGAGAAATAATGGTGTTGGAAGATTTATTAATAGGCGGAATACACACATAGTGGATGGAAGAAACATTGGGAGTGGTCAAAGCAGCACACATGTACAACATAGTTCTCAATCAGATCATATTGCTCAACCAAGTTCTGTGATCATGCCAGATGTGGACCAGTCAGCTGTTAACCGTCCTACTGCTGACATTCTGACTAAAAGGCAAAGGAGACGTGAATCACCTGGGGAGTCATCAAGTTCATATCCGGAAGTGGTAGAGTTGTTATCCACACCAAGGAACTCAGCAAGCTCATCCCGGAGCCGTGGCTTGGATCCTGAAGTGGTTGAGTTGGTATCCACACCAAGGCACAAATCATCTGAAGATTTAGATGATAACGACAACAATAGCTTGGAAGCTCGAGCAAGACAAGTGGAAGCAGATGAGATTTTGGCACGTGAACTCCAAGAACAATTGTATCATGATGATTTCATAGAAAACAGAGGGATTGATGAACATTTAGCGTGGGAGTTGCAGCATGCAGAGGATCTTCTGCCTACATCCATTAATAGTCACAGCATAAATCATCATGCACGGCTTCCTAGGGCAAACAGACAGCCTCGTATATTGCCTAATCAGAATTCAAGAAGGAGAGCTGTGCCTGTAGTTTCTTTCTCTAATAGAGTGTCACAGTTGAGGAGTCGTGCCACAAGTAGGGCTCGGACACCTAACATGTCATCTAGAGGAAGGGCCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGATATATTGGAAGCTTTAGAAAATTCAATGGGGGATTTCAATGATATGGGAATGGCTGATGGCATCTTTAATGGGCGACGTGATTTCAATGAAAGTGATTATGAAATGTTATTGGCCCTTGACGAGAGAAATCACCAACATACTGGTGCGTCTACTAATCTGATAAATAGCCTTCCACAGTCCACCATCCAGAATGACAACATGACAGAGCCATGTGCTATATGTCTTGAGACCCCAGCCAAGGGAGAAACTATTCGCCACCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGAAAAACAACATGCCCTGTATGCAAGTCATCAATCACCTAA 2154 0.4262 MAEDMKIDQIVEVPDTPDRIIVRGDDQKRLCNPEKRSRAFNAAVEMKNNLCTTLSPSEKSYTSQNAPIFRRGQTMHSSGAEKMEKGKSIYSKFSSKSSHRDISVLDLTEDNGPSQQLKPAFSLGASRDHATEDKKAPKATIGNSLLPAISDSSVTSRNPFTGKCKLPGSNTSVDRGKGISLSQDSQSQNDKQVSLPPFVSSSPRGRGNKRLVRNGCILPDNIATRAKQLAEQRHLQNEDVEQSHADRALSSNAVSPNSVHDIVARERRNGKVKGKEVLISPPFSGRSAGTFCAANSPVINHEEVTGTNNDTRNSLQYPGGQGGWRTTRNYRNANQHTYDEHRMTRNNGVGRFINRRNTHIVDGRNIGSGQSSTHVQHSSQSDHIAQPSSVIMPDVDQSAVNRPTADILTKRQRRRESPGESSSSYPEVVELLSTPRNSASSSRSRGLDPEVVELVSTPRHKSSEDLDDNDNNSLEARARQVEADEILARELQEQLYHDDFIENRGIDEHLAWELQHAEDLLPTSINSHSINHHARLPRANRQPRILPNQNSRRRAVPVVSFSNRVSQLRSRATSRARTPNMSSRGRAPRFPLDMDLDMRLDILEALENSMGDFNDMGMADGIFNGRRDFNESDYEMLLALDERNHQHTGASTNLINSLPQSTIQNDNMTEPCAICLETPAKGETIRHLPCLHKFHKDCIDPWLQRKTTCPVCKSSIT 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4649g00007 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 717 IPR013083 -
Vium4649g00007 717 Pfam Ring finger domain 672 713 IPR001841 -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 231 260 - -
Vium4649g00007 717 SMART ringv_2 671 713 IPR011016 GO:0008270
Vium4649g00007 717 ProSiteProfiles Zinc finger RING-type profile. 672 713 IPR001841 -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 567 581 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 56 86 - -
Vium4649g00007 717 FunFam RING/U-box superfamily protein 637 717 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 361 395 - -
Vium4649g00007 717 SUPERFAMILY RING/U-box 660 716 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 567 589 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 303 323 - -
Vium4649g00007 717 SMART ring_2 672 712 IPR001841 -
Vium4649g00007 717 CDD RING-H2_PA-TM-RING 671 713 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 145 201 - -
Vium4649g00007 717 PANTHER SI:CH211-59O9.10 311 717 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 360 427 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 56 72 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 231 245 - -
Vium4649g00007 717 MobiDBLite consensus disorder prediction 108 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4649g00007 Vium-Chr4649 151396 159825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4649g00007 3 717 C3H Transcription Factor Family AT1G04790 33.154 1.59e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4649g00007 - - gmx:100796218 861.292