Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4648g00012 ATGGTTGATAACAGTGTGTTAGAGCTGAACCTTGGTTTAGGTAACAACAACAACAATAACAACGTTGTTGTTGGTGGTCATGCACATGCAGGACAGTCACCGAGGCAAAGGTGTCCGGCACCATTTCTGTTGAAGACGTACGATCTGTTGGAAGAAGGTGAGAGTGAAGATATGACAAGAATAGTGTCGTGGAATGAAGAAGGAAGTGCCTTTGTTGTGTGGTCTCCTGCAGAATTCTCTGAGCACACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACTTATGGATTTAAGAAAATGTCATCGAAAAGATGGGAATTCAAACACGAGAAATTTCAGAGGGGTTGCAGGCACATGCTAGGTGAAATCACAAGGAAAAAGTGCGAGCCAAGTGTTTTTCCTGCATACCTTAAGTCTTCTTCTGAGGAAAATGCAACGAGTTCCACAGAAGAAAACAATCAGCAACTTCTTATGGAGGAGAACAAGAACCTTAAGAAGGAGAGATTAGAGCTTCAAATGCAGATTGATGAGTGCAAAGCACTTGAAATGAAGTTGCTCGCATGCCTCTCTCAGTTTATGGACACCCAACAAACTAAAATTAGGAGACTTTGTTAA 639 0.4178 MVDNSVLELNLGLGNNNNNNNVVVGGHAHAGQSPRQRCPAPFLLKTYDLLEEGESEDMTRIVSWNEEGSAFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKRWEFKHEKFQRGCRHMLGEITRKKCEPSVFPAYLKSSSEENATSSTEENNQQLLMEENKNLKKERLELQMQIDECKALEMKLLACLSQFMDTQQTKIRRLC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4648g00012 212 Coils Coil 155 192 - -
Vium4648g00012 212 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4648g00012 212 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4648g00012 212 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4648g00012 212 SUPERFAMILY "Winged helix" DNA-binding domain 39 134 IPR036390 -
Vium4648g00012 212 Pfam HSF-type DNA-binding 42 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4648g00012 212 FunFam Heat stress transcription factor A-6b 35 135 - -
Vium4648g00012 212 Gene3D - 34 135 IPR036388 -
Vium4648g00012 212 SMART hsfneu3 38 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium4648g00012 212 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 186 IPR027725 -
Vium4648g00012 212 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4648g00012 Vium-Chr4648 87079 89183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4648g00012 30 206 HSF AT5G62020 35.885 4.32e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium4648g00012 HSF_DNA-bind 7.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4648g00012 K09419 - gmx:100789792 307.375