Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4647g00001 ATGTATTCTTCTGCTGCTACTTTCTTTCCTTCACTCCACCATGACCTTGAGAACTTCCACTCAAGAAGGTTGCTTCTTCACTCCCCACTGAACCAATCAGCCAAGCCTCCGGCAACCCCCCACGATTCCACAGAAACATATCTAGGAGACGGAAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTACTACTCTGTGCACTAATATGCTCCTTGGGTTTGAACTCCATCATCAGGTGTGCACTGAGGTGTTCGAATTTCGTAGTGAGTGACTCAGTGGCAACGAACAGCCCTCCAGCGAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGACTTACTCGGCCGAGCTTAACCTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAGGTGGTGAAAAGGTGCGCATTTTGCCAAAGTGCAACCACGGATTCCACGTACGCTGCATTGACATGTGGCTCAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTGATCGAGACTTGCCAAAAGATCGTTGGCTGCAATCAGCAAGCTAGCTCCTCTCAACAACCCGTCTTGCAGGTGCCAGAAACCATTCTCACCATTACGCCACTGGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTTAG 675 0.4919 MYSSAATFFPSLHHDLENFHSRRLLLHSPLNQSAKPPATPHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVANTGVKKKALKTFPTVTYSAELNLPSLDSECVICLSEFTGGEKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRHCLIETCQKIVGCNQQASSSQQPVLQVPETILTITPLDPEGLVRNYREL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4647g00001 224 CDD RING-H2_EL5-like 132 175 - -
Vium4647g00001 224 Pfam Ring finger domain 132 175 IPR001841 -
Vium4647g00001 224 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vium4647g00001 224 PANTHER RING-H2 FINGER PROTEIN ATL78 15 217 IPR044602 GO:0016567|GO:0016740
Vium4647g00001 224 SMART ring_2 133 174 IPR001841 -
Vium4647g00001 224 SUPERFAMILY RING/U-box 111 180 - -
Vium4647g00001 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Vium4647g00001 224 FunFam RING-H2 finger protein ATL73 92 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4647g00001 Vium-Chr4647 4304 5137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4647g00001 23 179 C3H Transcription Factor Family AT3G10910 47.239 1.91e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4647g00001 K19040 - gmx:100807227 376.326