Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4647g00001 | ATGTATTCTTCTGCTGCTACTTTCTTTCCTTCACTCCACCATGACCTTGAGAACTTCCACTCAAGAAGGTTGCTTCTTCACTCCCCACTGAACCAATCAGCCAAGCCTCCGGCAACCCCCCACGATTCCACAGAAACATATCTAGGAGACGGAAATTTCGATGCAAATGTTGTGATGGTACTCTCAGTACTACTCTGTGCACTAATATGCTCCTTGGGTTTGAACTCCATCATCAGGTGTGCACTGAGGTGTTCGAATTTCGTAGTGAGTGACTCAGTGGCAACGAACAGCCCTCCAGCGAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCCCCACAGTGACTTACTCGGCCGAGCTTAACCTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTGTCAGAGTTCACAGGTGGTGAAAAGGTGCGCATTTTGCCAAAGTGCAACCACGGATTCCACGTACGCTGCATTGACATGTGGCTCAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTGATCGAGACTTGCCAAAAGATCGTTGGCTGCAATCAGCAAGCTAGCTCCTCTCAACAACCCGTCTTGCAGGTGCCAGAAACCATTCTCACCATTACGCCACTGGACCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTTAG | 675 | 0.4919 | MYSSAATFFPSLHHDLENFHSRRLLLHSPLNQSAKPPATPHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNSPPARVANTGVKKKALKTFPTVTYSAELNLPSLDSECVICLSEFTGGEKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRHCLIETCQKIVGCNQQASSSQQPVLQVPETILTITPLDPEGLVRNYREL | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4647g00001 | 224 | CDD | RING-H2_EL5-like | 132 | 175 | - | - | |
Vium4647g00001 | 224 | Pfam | Ring finger domain | 132 | 175 | IPR001841 | - | |
Vium4647g00001 | 224 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 175 | IPR001841 | - | |
Vium4647g00001 | 224 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 15 | 217 | IPR044602 | GO:0016567|GO:0016740 | |
Vium4647g00001 | 224 | SMART | ring_2 | 133 | 174 | IPR001841 | - | |
Vium4647g00001 | 224 | SUPERFAMILY | RING/U-box | 111 | 180 | - | - | |
Vium4647g00001 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 179 | IPR013083 | - | |
Vium4647g00001 | 224 | FunFam | RING-H2 finger protein ATL73 | 92 | 180 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4647g00001 | Vium-Chr4647 | 4304 | 5137 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4647g00001 | 23 | 179 | C3H Transcription Factor Family | AT3G10910 | 47.239 | 1.91e-44 | 145 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4647g00001 | K19040 | - | gmx:100807227 | 376.326 |