Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4645g00008 ATGGGGCGTGGAAGGATACCCATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCTTCAAAGTTTCTAGATGAACCTGAAATATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGGATTGAAGGAGAGATTTCCAAAGTGCACAAAGGGAAGATCCAGCTCATTTATCCAACCTGGGATGACTCTTACAATACTCTTGAAGAGGAACAGTTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGTAATAGCAGAATCAGACAATGATGAAGCACTTGTTCCTTACTTGGCTCCAACTTTAGGTAATCACCTCAGTTTCATGCAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGATAACAATCAAGTACCATTTTATCCATGTCAACTCAGTCAAAATTCTCTACCTTCTTTGTTTCAATTGGGTCAAAACTTTACCCAATTGATAGAAAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTACAAGTGATCACAGAATTGATACACAACAGGAGGATAGAACAAACAAAAACCAAAACCCATCATCGTGCTATTACGATGCAAATATTCAAACAATGCAGCCGTATAATAATGTTGCTTTGCAAACTCTTCCTGCTCAATTGCAGTGCGATGCAACATTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTGAACCTAATGATGTTTCTAATATGCTTCAACCTCATTTTTTAAACTATATGCAAAGAAGAAACTAG 981 0.3802 MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFDERMKRIEGEISKVHKGKIQLIYPTWDDSYNTLEEEQLRMFVSILDAKLDACNQRMNMFKRDSKGKVIAESDNDEALVPYLAPTLGNHLSFMQNMSQTQVFPTNDNNQVPFYPCQLSQNSLPSLFQLGQNFTQLIEKNIAVDWNNQVGTSDHRIDTQQEDRTNKNQNPSSCYYDANIQTMQPYNNVALQTLPAQLQCDATFQSLSNRPGPSQGFEPNDVSNMLQPHFLNYMQRRN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4645g00008 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 CDD MADS 2 51 - -
Vium4645g00008 326 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vium4645g00008 326 PANTHER MADS BOX PROTEIN 3 127 - -
Vium4645g00008 326 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vium4645g00008 326 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vium4645g00008 326 MobiDBLite consensus disorder prediction 241 260 - -
Vium4645g00008 326 MobiDBLite consensus disorder prediction 293 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4645g00008 Vium-Chr4645 179794 180774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4645g00008 1 204 Type I MADS-box Gene Family AT5G55690 32.701 1.56e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium4645g00008 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4645g00008 - - ccaj:109800518 416.387