Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4645g00001 ATGGACAGGGACAAGGACAAGTCTCACACTCACAGTTTTTTTCGCAGTTTCGTTAAACACTTCAAATTCGGTTCCAGTAAAGAGGGAAGCGATGAAGCTGACATACAGAAAATGGCTGCGCAAGAGCAGAAGATTTTTGCCTACGAAACCTTGGCTTCTGTCACCAAGAATTTTAGTGATATTCACAAGCTAGGCGAGGGAGGTTTTGGCCTTGTCTACAAGGGTAAGTTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACACAGTTCAAATCAAGGGAAGAAAGAGTTCATGAACGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATCTGGTGGGCTATTGTGTCCATGGCAACGAAAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGTCTAGACAAGTTTCTTTTCAAATCACAAAAGAGAGAGAAGCTGGATTGGAAACGTAGGTTGGGCATAATCACAGGCGTGGCAAAGGGTTTACTTTATCTGCACGAAGACTCACACAATTGCATCATCCATCGCGACATCAAGGCCAGTAATATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCTCGTCTCTTCCCCGAAGATCAGACCCAAGTCAACACACGTGTGGCTGGAACCAATGGATACATGGCTCCAGAATATGTTATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTATTGGAATTGATCACCGGCCAAAGAAACTCCTCTTTCAATTTGGACGTGGACGCCCAGAGCATGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGAACCGACGTTGGCAGGTACAATGGTAGGTGAAGAGGTAGCGATGTGCATTCAGATGGGTTTGTTATGCACTCAAGGTGATCCACAGCTACGTCCCACGATGAGGCGTGTGGTGGTGATGCTGTCAAGGAAACCAGGCCAGATGCAAGAACCAACCAGACCAGGGGTGCCTGGTTCTAGATACAGAAGACCTCGAAGACACTCTGCATTGTCTTCCACATTGGGTACCTCAGGTGCCTCCGATTCACACACTTCTGATTCAAGTAATTATACGACTGTTACTACTAGTGCCACTGGGACCAGCTCTGCCACTGTTGAATCAGACCCCAAGGGTAAACGTCCAATGAGGGAGGGTTAA 1218 0.4606 MDRDKDKSHTHSFFRSFVKHFKFGSSKEGSDEADIQKMAAQEQKIFAYETLASVTKNFSDIHKLGEGGFGLVYKGKLNDGREIAVKKLSHSSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFKSQKREKLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQSMLDWAYKMYKKGKSLEIVEPTLAGTMVGEEVAMCIQMGLLCTQGDPQLRPTMRRVVVMLSRKPGQMQEPTRPGVPGSRYRRPRRHSALSSTLGTSGASDSHTSDSSNYTTVTTSATGTSSATVESDPKGKRPMREG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4645g00001 405 SUPERFAMILY Protein kinase-like (PK-like) 43 342 IPR011009 -
Vium4645g00001 405 FunFam Cysteine-rich receptor-like protein kinase 10 22 133 - -
Vium4645g00001 405 Gene3D Transferase(Phosphotransferase) domain 1 135 339 - -
Vium4645g00001 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vium4645g00001 405 Pfam Protein tyrosine and serine/threonine kinase 62 327 IPR001245 GO:0004672|GO:0006468
Vium4645g00001 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 382 - -
Vium4645g00001 405 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Vium4645g00001 405 Gene3D Phosphorylase Kinase; domain 1 20 133 - -
Vium4645g00001 405 MobiDBLite consensus disorder prediction 328 405 - -
Vium4645g00001 405 SMART serkin_6 58 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4645g00001 405 MobiDBLite consensus disorder prediction 356 394 - -
Vium4645g00001 405 ProSiteProfiles Protein kinase domain profile. 58 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4645g00001 405 FunFam Cysteine-rich receptor-like protein kinase 10 135 340 - -
Vium4645g00001 405 CDD STKc_IRAK 64 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4645g00001 Vium-Chr4645 9530 14876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4645g00001 46 342 Receptor kinase-like Gene Family AT4G11530 51.171 1.74e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4645g00001 PK_Tyr_Ser-Thr 6.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4645g00001 - - var:108347873 768.074