Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4644g00009 ATGGCGGCACGGAACCTTTGCTGCATGGCACTGCGATCGTCAAAGCTTCTCTCTCGCCCTTCCCATCTTCTCTCTGTTCAGATGCGGATGCAGATGCAGATGCAGATGCTGTCCTCTTCTCTTCCTCTCACCCGAAAGATGAGCATGGATGCACAGAGTGTTGCTTCCAAGCTTAATAGTTCTGGATTGCTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGACGCTTATGATGGAAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATTGCAGATGTGGCATGCATGGGTGGAAGAGAGACGAATGATGCAATTTCTGCTGCCTATACTGCATATCGATCATGGAGCAAAACCACTGCTGCTGAAAGAAGCAAATTTTTGAGGAAATGGTATGATTTGCTAATGGCACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAGGGGAAAACTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCTGGATTTATTGAGTTTTCAGCTGAGGAGGCAAAACGTGTATATGGGGATATAATTCCTGCACCTTTATCTGATCGGAGATTGTTTGTTCTTAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATGATTACTCGAAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTGATAAAACCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCTGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTTGTAATGGGAAATGCTCCTGAAATTGGAGACAGTTTGCTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTAATGGCTGGTTCAGCTGAGACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTTGATGTTGCAGTAAAAGGAACTCTTGCAGCGAAGTTCCGTAATAGTGGACAAACATGCGTTTGTGCAAATAGAATTATTGTACAAGATGGTATATATGAAAAATTTGCAAATGCACTCCGTGATGCTGTTCTGAATATGAAAGTTGGGGATGGTTTTAGTGAAGATGTGGCACAGGGCCCTCTAATCAATGAAGCTGCTGTGCAAAAGGTGGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAATAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACATTTTATGAACCAACGGTGATCAGTGATGTCAACATTGATATGCGCATATCCAGAGAGGAAGTATTTGGACCCGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGAATTGCTAACGACACCAACGCAGGTTTGGGTTCATACGTGTTTACGAACAGTATCCAACGATCATGGCGTGTAGCAGAGGCTCTAGAATATGGACTTGTTGGTGTTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCTTTCGGTGGTTTTAAGCAATCCGGGCTCGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTAGAGATAAAATATGTCTGCATGGGAAACATGAACAAAGAATGA 1626 0.4336 MAARNLCCMALRSSKLLSRPSHLLSVQMRMQMQMQMLSSSLPLTRKMSMDAQSVASKLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIADVACMGGRETNDAISAAYTAYRSWSKTTAAERSKFLRKWYDLLMAHKEELAQLITLEQGKTLKESIGEINYGAGFIEFSAEEAKRVYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDSLLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIVFDDADLDVAVKGTLAAKFRNSGQTCVCANRIIVQDGIYEKFANALRDAVLNMKVGDGFSEDVAQGPLINEAAVQKVESLIHDATSKGAKIILGGKRHSLGFTFYEPTVISDVNIDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCMGNMNKE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4644g00009 541 FunFam Aldehyde dehydrogenase, putative 505 531 - -
Vium4644g00009 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Vium4644g00009 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Vium4644g00009 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 59 538 - -
Vium4644g00009 541 FunFam Succinate-semialdehyde dehydrogenase I 80 325 - -
Vium4644g00009 541 SUPERFAMILY ALDH-like 62 539 IPR016161 GO:0016491
Vium4644g00009 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Vium4644g00009 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Vium4644g00009 541 NCBIfam succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Vium4644g00009 541 FunFam Succinate-semialdehyde dehydrogenase I 313 502 - -
Vium4644g00009 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Vium4644g00009 541 Pfam Aldehyde dehydrogenase family 76 533 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4644g00009 Vium-Chr4644 115970 139933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4644g00009 45 541 Aldehyde Dehydrogenase Gene Family AT1G79440 81.288 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4644g00009 K17761 - gmx:100808318 971.844