Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4644g00003 | ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTCGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCGGCCAGTAACTTAAAGGGTGGTATCGTACCTCCTCAAAGCATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTTGCTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGACCAAATTGAGCTTCAGCACAACATGGAGAAGCCACCCCTTGATCATGGATTTATGTCGATGAATGAGAATTTGTGTTTGGGGAAGAAGAGGTCGAATCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTGCAAGACCTGGGAGGACCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGACCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCTATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTTGGGGAGAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAAGCTGAAAGGATGAGTCCAATGATCAGCACCGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA | 1146 | 0.4686 | MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAASNLKGGIVPPQSIPDMGVLKEFGSPLAFSSFQDLENIYGGDQIELQHNMEKPPLDHGFMSMNENLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG | 381 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4644g00003 | 381 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 12 | 194 | IPR044848 | GO:0003700 | |
Vium4644g00003 | 381 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vium4644g00003 | 381 | FunFam | Myb family transcription factor | 34 | 92 | - | - | |
Vium4644g00003 | 381 | Pfam | MYB-CC type transfactor, LHEQLE motif | 134 | 179 | IPR025756 | - | |
Vium4644g00003 | 381 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 35 | 90 | IPR006447 | GO:0003677 | |
Vium4644g00003 | 381 | SUPERFAMILY | Homeodomain-like | 34 | 90 | IPR009057 | - | |
Vium4644g00003 | 381 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 32 | 92 | IPR017930 | - | |
Vium4644g00003 | 381 | Pfam | Myb-like DNA-binding domain | 38 | 86 | IPR001005 | - | |
Vium4644g00003 | 381 | MobiDBLite | consensus disorder prediction | 344 | 381 | - | - | |
Vium4644g00003 | 381 | Gene3D | - | 34 | 92 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4644g00003 | Vium-Chr4644 | 59914 | 62578 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4644g00003 | 4 | 381 | G2-like Transcription Factor Family | AT1G79430 | 57.033 | 1.18e-124 | 362 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Vium4644g00003 | Myb_DNA-binding | 2.1e-06 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4644g00003 | - | - | gmx:100807793 | 681.019 |