Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4644g00002 ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTCGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCGGCCAGTAACTTAAAGGGTGGTATCGTACCTCCTCAAAGCATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTTGCTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGACCAAATTGAGCTTCAGCACAACATGGAGAAGCCACCCCTTGATCATGGATTTATGTCGATGAATGAGAATTTGTGTTTGGGGAAGAAGAGGTCGAATCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTGCAAGACCTGGGAGGACCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGACCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCTATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTTGTTGGGGAGAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAAGCTGAAAGGATGAGTCCAATGATCAGCACCGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1137 0.4688 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAASNLKGGIVPPQSIPDMGVLKEFGSPLAFSSFQDLENIYGGDQIELQHNMEKPPLDHGFMSMNENLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4644g00002 378 Gene3D - 34 92 - -
Vium4644g00002 378 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Vium4644g00002 378 MobiDBLite consensus disorder prediction 1 20 - -
Vium4644g00002 378 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Vium4644g00002 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Vium4644g00002 378 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Vium4644g00002 378 MobiDBLite consensus disorder prediction 341 378 - -
Vium4644g00002 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 191 IPR044848 GO:0003700
Vium4644g00002 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Vium4644g00002 378 FunFam Myb family transcription factor 34 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4644g00002 Vium-Chr4644 59913 62578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4644g00002 4 378 G2-like Transcription Factor Family AT1G79430 56.522 2.78e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium4644g00002 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4644g00002 - - gmx:100807793 669.463