Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00024 ATGGAAAAGAGAGGTGACGGTGCTGATGCTGAGCCTCAATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGATGTACTGGAAATGAAAAGGGTGACAAGGCCCCCAAGATACCTCAGTCCAGACGGCCTAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCAGTAGAGGACTTCCTCCAAGGCCAAATTCAGCTAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATACTTGTTCCCAGGATTTTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCTGTCTCTTAAAAATAAGGTCATCTCCCCATCAGCAAAAGGTGCACAGTCATTGCCAGTTACTCCATTTGCAACTTCAGCTTCAGAGACCGCAGATGGAGGACATCTTGTATGTGATTCTGGTTCAAGTAAAATGGGTGGTCATCCGCATATTATTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATGCCACGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTCGCACTTGCTCACCGGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGAACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTAAAAATTTGCAGTCGTGAAACTACTGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAAGTATCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGTTTACCAGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAG 1137 0.4406 MEKRGDGADAEPQFDADFVPDPSQRCTGNEKGDKAPKIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSSRGLPPRPNSAKVRSSMRTLLPQKGVKTNTCSQDFERTGLIVPKTPLSDAPLDKSSIHLSLKNKVISPSAKGAQSLPVTPFATSASETADGGHLVCDSGSSKMGGHPHIIRSFSVPVKSKAASLRVTDATGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICSRETTARQTSNVPPRAEVSYYRIWQDVPVLILVSMLSYFCFLEQLLFTRFQIWALVLLPFHYLLPVF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00024 378 MobiDBLite consensus disorder prediction 65 96 - -
Vium4642g00024 378 CDD RING_CH-C4HC3_MARCH 249 297 - -
Vium4642g00024 378 MobiDBLite consensus disorder prediction 1 49 - -
Vium4642g00024 378 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Vium4642g00024 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 305 IPR013083 -
Vium4642g00024 378 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Vium4642g00024 378 PANTHER OS02G0165000 PROTEIN 31 375 - -
Vium4642g00024 378 SMART ringv_2 248 297 IPR011016 GO:0008270
Vium4642g00024 378 SUPERFAMILY RING/U-box 245 300 - -
Vium4642g00024 378 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00024 Vium-Chr4642 140167 146013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00024 235 303 C3H Transcription Factor Family AT2G37950 44.286 4.90e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00024 - - gmx:100789461 540.421