Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00021 ATGGAAAAGAGAGGTGACGGTGCTGATGCTGAGCCTCAATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGATGTACTGGAAATGAAAAGGGTGACAAGGCCCCCAAGATACCTCAGTCCAGACGGCCTAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCAGTAGAGGACTTCCTCCAAGGCCAAATTCAGCTAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATACTTGTTCCCAGGATTTTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCTGTCTCTTAAAAATAAGGTCATCTCCCCATCAGCAAAAGGTGCACAGTCATTGCCAGTTACTCCATTTGCAACTTCAGCTTCAGAGACCGCAGATGGAGGACATCTTAAAATGGGTGGTCATCCGCATATTATTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATGCCACGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTCGCACTTGCTCACCGGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGAACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTAAAAATTTGCAGTCGTGAAACTACTGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAAGTATCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATTTATTTTACACTATTCTCAATTTAAATGCAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTACAATCAGTACGAACTCTCTGGTTATGGAATTTATCGGATGGAGAAATATTTGGAGGATTCAATCCTCTGTCCAGAATGTTAACATGACAGAGCAACCGCGTCGAGAGCATGTAAATCATCAGAGACGGGAAAATCAAATAGAACATCAACCACAAAGACAATCATCAACGACGCCAGAACTGCCGCAGCATCATGGCAACAGTTGA 1485 0.4357 MEKRGDGADAEPQFDADFVPDPSQRCTGNEKGDKAPKIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSSRGLPPRPNSAKVRSSMRTLLPQKGVKTNTCSQDFERTGLIVPKTPLSDAPLDKSSIHLSLKNKVISPSAKGAQSLPVTPFATSASETADGGHLKMGGHPHIIRSFSVPVKSKAASLRVTDATGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICSRETTARQTSNVPPRAEVSYYRIWQDVPVLILVSMLSYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHLFYTILNLNAVLSILLSSFTGFGITISTNSLVMEFIGWRNIWRIQSSVQNVNMTEQPRREHVNHQRRENQIEHQPQRQSSTTPELPQHHGNS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00021 494 ProSiteProfiles Zinc finger RING-CH-type profile. 234 296 IPR011016 GO:0008270
Vium4642g00021 494 PANTHER OS02G0165000 PROTEIN 31 454 - -
Vium4642g00021 494 SMART ringv_2 241 290 IPR011016 GO:0008270
Vium4642g00021 494 MobiDBLite consensus disorder prediction 459 475 - -
Vium4642g00021 494 MobiDBLite consensus disorder prediction 65 96 - -
Vium4642g00021 494 MobiDBLite consensus disorder prediction 1 49 - -
Vium4642g00021 494 SUPERFAMILY RING/U-box 238 293 - -
Vium4642g00021 494 Pfam RING-variant domain 242 289 IPR011016 GO:0008270
Vium4642g00021 494 CDD RING_CH-C4HC3_MARCH 242 290 - -
Vium4642g00021 494 MobiDBLite consensus disorder prediction 476 494 - -
Vium4642g00021 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 297 IPR013083 -
Vium4642g00021 494 MobiDBLite consensus disorder prediction 456 494 - -
Vium4642g00021 494 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00021 Vium-Chr4642 139510 146013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00021 228 296 C3H Transcription Factor Family AT2G37950 44.286 3.92e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00021 - - gmx:100789461 722.235