Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00020 ATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATACTTGTTCCCAGGATTTTGAAAGGACAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCTGTCTCTTAAAAATAAGGTCATCTCCCCATCAGCAAAAGGTGCACAGTCATTGCCAGTTACTCCATTTGCAACTTCAGCTTCAGAGACCGCAGATGGAGGACATCTTGTATGTGATTCTGGTTCAAGTAAAATGGGTGGTCATCCGCATATTATTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATGCCACGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTCGCACTTGCTCACCGGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGAACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTAAAAATTTGCAGTCGTGAAACTACTGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAAGTATCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTTCTTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTTGCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATTTATTTTACACTATTCTCAATTTAAATGCAGTTCTCTCGATTCTCCTTTCCTCATTCACTGGGTTTGGCATTACAATCAGTACGAACTCTCTGGTTATGGAATTTATCGGATGGAGAAATATTTGGAGGATTCAATCCTCTGTCCAGAATGTTAACATGACAGAGCAACCGCGTCGAGAGCATGTAAATCATCAGAGACGGGAAAATCAAATAGAACATCAACCACAAAGACAATCATCAACGACGCCAGAACTGCCGCAGCATCATGGCAACAGTTGA 1224 0.4273 MRTLLPQKGVKTNTCSQDFERTGLIVPKTPLSDAPLDKSSIHLSLKNKVISPSAKGAQSLPVTPFATSASETADGGHLVCDSGSSKMGGHPHIIRSFSVPVKSKAASLRVTDATGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICSRETTARQTSNVPPRAEVSYYRIWQDVPVLILVSMLSYFCFLEQLLVSDLGPRALAISLPFACVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHLFYTILNLNAVLSILLSSFTGFGITISTNSLVMEFIGWRNIWRIQSSVQNVNMTEQPRREHVNHQRRENQIEHQPQRQSSTTPELPQHHGNS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00020 407 PANTHER OS02G0165000 PROTEIN 2 367 - -
Vium4642g00020 407 SMART ringv_2 154 203 IPR011016 GO:0008270
Vium4642g00020 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 210 IPR013083 -
Vium4642g00020 407 CDD RING_CH-C4HC3_MARCH 155 203 - -
Vium4642g00020 407 MobiDBLite consensus disorder prediction 389 407 - -
Vium4642g00020 407 MobiDBLite consensus disorder prediction 369 407 - -
Vium4642g00020 407 MobiDBLite consensus disorder prediction 372 388 - -
Vium4642g00020 407 SUPERFAMILY RING/U-box 151 206 - -
Vium4642g00020 407 ProSiteProfiles Zinc finger RING-CH-type profile. 147 209 IPR011016 GO:0008270
Vium4642g00020 407 Pfam RING-variant domain 155 202 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00020 Vium-Chr4642 139510 146013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00020 141 209 C3H Transcription Factor Family AT2G37950 44.286 2.49e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00020 - - gmx:100789461 597.045