Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00017 ATGGGTTGCTGCCAATCGTCGATACTGAGAGTGGGTGAGAGGGAGACTCACCCGGAGAGGGAAAAGGAAAAGGAAAAGGAAAAGGAGAAGGAGAAGGAGAAAGAGCAGGCGTACGGAACACACCAGAGGACTTCTGCCGGAGATGGAGAGGGAGATGGAGACAAAGAGGGGGTTGATTTCTCCTTTGCCGAGTTCTCGCTGCCGGAGCTCAAGGCGGCCACCAACAATTTCAGCTCAGAGTATATCGTCTCGGAGAGTGGTGACAAGGCGCCTAACCTCGTCTACAAGGGTCGTCTCCAGAACCAGAGCCGTTGGATTGCAGTCAAGAAGTTCAGCAAGGCTGCCTGGCCGGATCCCAAGCAATTCGTTGAAGAGGCTTCCGGCGTTGGCAAGTTGCGCCACCCAAGGCTCGCTAATTTAATCGGTTACTGTTGCGACGGCGATGAGAGGCTCCTCGTTGCGGAGTACATGCCCAATGACACTCTCGCCAAGCATCTCTTCCACTGGGAAACTCAGACCATTGAGTGGGCCATGCGCTTGCGGGTTGCTCTGTACATCGCTCAGGCTTTGCATTATTGCAGTTCGGAGGGGCGCCCTCTGTACCATGACTTGAATGCTTACCGTGTTCTCTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTATACACCTCCTGAATATTTAAGAAACGGAAGGGTCACCCCTGAAAGTGTAATTTACAGCTTTGGAACTGTCCTTCTAGACCTCCTCAGTGGCAAACACATTCCTCCCAGTCATGCACTTGATATGATACAGGGGAAGAACAATATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCAACAGAAGAAGCGACAGTGGTTGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAAGATTTGGTCACAACACTTGCCCCATTGCACACAAAACCCGATGTTCGTTCTCACATAATGCTTGGAATTCCAAAGCATGAGGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCTTGTTCAAGAATGGACCTTACTGCAATACATCAGATCTTGGTCGCGACACACTACAGAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTGGGAACGATGGTCTCCCCAACTGTTTTTGCGAGACGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCACTACGTGACGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCGACGGCTTTCTACATGCAATCAGTTGCTCTTGCGAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGACAAAGAGGAACAAGAGGATCGTAA 1554 0.4929 MGCCQSSILRVGERETHPEREKEKEKEKEKEKEKEQAYGTHQRTSAGDGEGDGDKEGVDFSFAEFSLPELKAATNNFSSEYIVSESGDKAPNLVYKGRLQNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGTRGS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00017 517 Gene3D Phosphorylase Kinase; domain 1 53 156 - -
Vium4642g00017 517 FunFam probable serine/threonine-protein kinase At4g35230 52 156 - -
Vium4642g00017 517 FunFam probable serine/threonine-protein kinase At4g35230 406 515 - -
Vium4642g00017 517 MobiDBLite consensus disorder prediction 12 39 - -
Vium4642g00017 517 SUPERFAMILY TPR-like 409 511 IPR011990 GO:0005515
Vium4642g00017 517 MobiDBLite consensus disorder prediction 1 57 - -
Vium4642g00017 517 Gene3D Transferase(Phosphotransferase) domain 1 158 349 - -
Vium4642g00017 517 ProSiteProfiles Protein kinase domain profile. 80 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4642g00017 517 FunFam probable serine/threonine-protein kinase At5g41260 158 349 - -
Vium4642g00017 517 SUPERFAMILY Protein kinase-like (PK-like) 61 336 IPR011009 -
Vium4642g00017 517 Gene3D Tetratricopeptide repeat domain 406 515 IPR011990 GO:0005515
Vium4642g00017 517 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 25 512 IPR045845 GO:0004672|GO:0009742
Vium4642g00017 517 Pfam Protein kinase domain 94 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00017 Vium-Chr4642 124236 131601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00017 15 356 Glycoside Hydrolase AT3G07070 32.603 3.50e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium4642g00017 Pkinase 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00017 K14500 - gmx:100808907 991.875