Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00016 ATGGGTTGCTGCCAATCGTCGATACTGAGAGTGGGTGAGAGGGAGACTCACCCGGAGAGGGAAAAGGAAAAGGAAAAGGAAAAGGAGAAGGAGAAGGAGAAAGAGCAGGCGTACGGAACACACCAGAGGACTTCTGCCGGAGATGGAGAGGGAGATGGAGACAAAGAGGGGGTTGATTTCTCCTTTGCCGAGTTCTCGCTGCCGGAGCTCAAGGCGGCCACCAACAATTTCAGCTCAGAGTATATCGTCTCGGAGAGTGGTGACAAGGCGCCTAACCTCGTCTACAAGGGTCGTCTCCAGAACCAGAGCCGTTGGATTGCAGTCAAGAAGTTCAGCAAGGCTGCCTGGCCGGATCCCAAGCAATTCGTTGAAGAGGCTTCCGGCGTTGGCAAGTTGCGCCACCCAAGGCTCGCTAATTTAATCGGTTACTGTTGCGACGGCGATGAGAGGCTCCTCGTTGCGGAGTACATGCCCAATGACACTCTCGCCAAGCATCTCTTCCACTGGGAAACTCAGACCATTGAGTGGGCCATGCGCTTGCGGGTTGCTCTGTACATCGCTCAGGCTTTGCATTATTGCAGTTCGGAGGGGCGCCCTCTGTACCATGACTTGAATGCTTACCGTGTTCTCTTCGACCAGGAAGGTGATCCTCGTCTCTCTTGTTTCGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTATAGCACCAATCTTGCTTATACACCTCCTGAATATTTAAGAAACGGAAGGGTCACCCCTGAAAGTGTAATTTACAGCTTTGGAACTGTCCTTCTAGACCTCCTCAGTGGCAAACACATTCCTCCCAGTCATGGGAAGAACAATATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCAACAGAAGAAGCGACAGTGGTTGTTAATCTTGCCTCCAAATGCTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAAGATTTGGTCACAACACTTGCCCCATTGCACACAAAACCCGATGTTCGTTCTCACATAATGCTTGGAATTCCAAAGCATGAGGAAGCTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGAGAGGCTTGTTCAAGAATGGACCTTACTGCAATACATCAGATCTTGGTCGCGACACACTACAGAGATGATGAAGGAACTAATGAGCTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCATTCCGTGACAAAGACTTCAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTGGGAACGATGGTCTCCCCAACTGTTTTTGCGAGACGCAGTCTATGCTATCTGTTATGTGATCAACCAGATCCTGCACTACGTGACGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCGACGGCTTTCTACATGCAATCAGTTGCTCTTGCGAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGACAAAGAGGAACAAGAGGATCGTAA 1536 0.4941 MGCCQSSILRVGERETHPEREKEKEKEKEKEKEKEQAYGTHQRTSAGDGEGDGDKEGVDFSFAEFSLPELKAATNNFSSEYIVSESGDKAPNLVYKGRLQNQSRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDQEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGTRGS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00016 511 Gene3D Phosphorylase Kinase; domain 1 53 156 - -
Vium4642g00016 511 FunFam probable serine/threonine-protein kinase At5g41260 158 343 - -
Vium4642g00016 511 Gene3D Transferase(Phosphotransferase) domain 1 158 343 - -
Vium4642g00016 511 FunFam probable serine/threonine-protein kinase At4g35230 400 509 - -
Vium4642g00016 511 MobiDBLite consensus disorder prediction 12 39 - -
Vium4642g00016 511 MobiDBLite consensus disorder prediction 1 57 - -
Vium4642g00016 511 SUPERFAMILY Protein kinase-like (PK-like) 61 330 IPR011009 -
Vium4642g00016 511 ProSiteProfiles Protein kinase domain profile. 80 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4642g00016 511 FunFam probable serine/threonine-protein kinase At4g35230 52 156 - -
Vium4642g00016 511 SUPERFAMILY TPR-like 403 505 IPR011990 GO:0005515
Vium4642g00016 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 25 506 IPR045845 GO:0004672|GO:0009742
Vium4642g00016 511 Pfam Protein tyrosine and serine/threonine kinase 94 326 IPR001245 GO:0004672|GO:0006468
Vium4642g00016 511 Gene3D Tetratricopeptide repeat domain 400 509 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00016 Vium-Chr4642 124233 131601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00016 15 350 Glycoside Hydrolase AT3G07070 32.603 6.35e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium4642g00016 PK_Tyr_Ser-Thr 4.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00016 K14500 - gmx:100808907 974.541