Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4642g00005 | ATGAAGGAGGATTCTGACTGCGCCGAAGAAGCGGAGAAGAAGCGGAGAAGAACAATAGTGACAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGACACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCAACAGCAGCAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAAGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAGCAACAGAGAGAAAGGGAAAGAGAAAGAGAAGGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGCTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCCAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTCGATTTGAGGTTGGGACTCTAG | 759 | 0.5283 | MKEDSDCAEEAEKKRRRTIVTMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHQQQQQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNSNREKGKEKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNMNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRLGL | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4642g00005 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 132 | 159 | IPR013087 | - | |
| Vium4642g00005 | 252 | MobiDBLite | consensus disorder prediction | 61 | 92 | - | - | |
| Vium4642g00005 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 38 | 58 | IPR013087 | - | |
| Vium4642g00005 | 252 | SMART | c2h2final6 | 132 | 154 | IPR013087 | - | |
| Vium4642g00005 | 252 | SMART | c2h2final6 | 36 | 58 | IPR013087 | - | |
| Vium4642g00005 | 252 | SMART | c2h2final6 | 196 | 218 | IPR013087 | - | |
| Vium4642g00005 | 252 | Gene3D | Classic Zinc Finger | 9 | 102 | - | - | |
| Vium4642g00005 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 198 | 218 | IPR013087 | - | |
| Vium4642g00005 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 36 | 63 | IPR013087 | - | |
| Vium4642g00005 | 252 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 196 | 223 | IPR013087 | - | |
| Vium4642g00005 | 252 | SUPERFAMILY | beta-beta-alpha zinc fingers | 194 | 222 | IPR036236 | - | |
| Vium4642g00005 | 252 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
| Vium4642g00005 | 252 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 134 | 154 | IPR013087 | - | |
| Vium4642g00005 | 252 | SUPERFAMILY | beta-beta-alpha zinc fingers | 35 | 154 | IPR036236 | - | |
| Vium4642g00005 | 252 | Gene3D | Classic Zinc Finger | 129 | 218 | - | - | |
| Vium4642g00005 | 252 | Pfam | C2H2-type zinc finger | 196 | 220 | - | - | |
| Vium4642g00005 | 252 | Pfam | C2H2-type zinc finger | 37 | 60 | - | - | |
| Vium4642g00005 | 252 | Pfam | C2H2-type zinc finger | 132 | 155 | - | - | |
| Vium4642g00005 | 252 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 30 | 245 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4642g00005 | Vium-Chr4642 | 72009 | 72845 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4642g00005 | 36 | 252 | C2H2 Transcription Factor Family | AT4G35280 | 51.304 | 2.11e-69 | 213 |
Transcription factors information