Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00005 ATGAAGGAGGATTCTGACTGCGCCGAAGAAGCGGAGAAGAAGCGGAGAAGAACAATAGTGACAATGGAAGAGGAGGGGTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGACACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCAACAGCAGCAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAAGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAGCAACAGAGAGAAAGGGAAAGAGAAAGAGAAGGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGCTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACATGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGAAAACCTTCTCCTCCTTGACTCACCCAAGTCCTCCCTCGACTTGAATTCTCCTCCCCTCACTCTCGATTTGAGGTTGGGACTCTAG 759 0.5283 MKEDSDCAEEAEKKRRRTIVTMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHQQQQQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNSNREKGKEKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNMNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENQKGENLLLLDSPKSSLDLNSPPLTLDLRLGL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00005 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Vium4642g00005 252 MobiDBLite consensus disorder prediction 61 92 - -
Vium4642g00005 252 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vium4642g00005 252 SMART c2h2final6 132 154 IPR013087 -
Vium4642g00005 252 SMART c2h2final6 36 58 IPR013087 -
Vium4642g00005 252 SMART c2h2final6 196 218 IPR013087 -
Vium4642g00005 252 Gene3D Classic Zinc Finger 9 102 - -
Vium4642g00005 252 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Vium4642g00005 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vium4642g00005 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Vium4642g00005 252 SUPERFAMILY beta-beta-alpha zinc fingers 194 222 IPR036236 -
Vium4642g00005 252 MobiDBLite consensus disorder prediction 72 92 - -
Vium4642g00005 252 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Vium4642g00005 252 SUPERFAMILY beta-beta-alpha zinc fingers 35 154 IPR036236 -
Vium4642g00005 252 Gene3D Classic Zinc Finger 129 218 - -
Vium4642g00005 252 Pfam C2H2-type zinc finger 196 220 - -
Vium4642g00005 252 Pfam C2H2-type zinc finger 37 60 - -
Vium4642g00005 252 Pfam C2H2-type zinc finger 132 155 - -
Vium4642g00005 252 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00005 Vium-Chr4642 72009 72845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00005 36 252 C2H2 Transcription Factor Family AT4G35280 51.304 2.11e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4642g00005 zf-C2H2_6 9.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00005 - - vun:114195192 386.726