Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00003 ATGGAATATGGGGGGTTGGTGCAAAATTGTGGGTTTGGGAGCTTGTGGGAGTGTGATTCGGCCTCGGAAGAAGATTCGATCGAGGAGGTGCTGGCAGAAGGTTGCTGGGTGGAAACGAGTGGCGTTGGGAGCTGCGAGGCTCAGTATATTGGAAGTTCAGAAGCGGAGATGGAGGTGGAGTTGAGGAAGAGATGGTGGATTGGACCCAACAAGGTTAATTCCTCCGTCAAAGACAGACTGGTGGTGGCTGTCTGTTATCTCAGAGAATGCACAAAGAACTCCAATCTCATGATTCAGGTGTGGGTTCCCTTACGCAGAGGGCTTGTAGCTGGGCCTGAGTATCTCACCAGAAATTTAGATGACTGGGTTGCAGTTGAGATGAACATGAACGTCAACATGAACAGCGCAAGGGACGTCAGCCTTCGCTTCTACCGAAGCCAGGAATACCCTCGCCTTCCTTATTATGTTGATCTTCCTGGTTCTTTAGCCCTCCCGGTGTTCGAAAGAGGCACCAACACATGCCTCGGTGTCATCCAGATTCTAACGCCTCCCTGCGACACCATCAACTATTGCCCGCAGCTTCTTAACAATAATCTTCTCTGCAATCCTTTCCAGGCATTCGAGGAGGTGTACGAAGCAGCGGTGAATGAGATTGTGGAGGTGATGAGGTGTGTGTGCAGGGCGCAGAATGTGGCATTGGCTCTCAGCTGGGCTCCTTGTTGCATCCAGCAAGGAGGAAAGTGTGGTGGGTATGGCCATTCCACGGAGAATCACTTGTCAACAGTGGAGAGAGCGTGTTTTGTGGGAGATGCACAGGTTCTGGGCTTCAAGGAGGCTTCTTCTCAGCATCATCTCTTGCGAGGACAGGGAATCGTTGGCACGGCCTTCACAACGGCCAAGCCCTGCTTTGCGATCGACGTAGCCGCCTTCACCAGAGCCCAGTATCCTCTGGCTCACCACGCCAACATCTTTGGCCTGCACGCTGCCGTCGCCATTCCTCTAAGAAGCCTCTACACCGATTTTGTCGTCGAGTTCTTCCTTCCCAAGGACTGCCGTGACAGGGAAAATCAAAGCCACTTCCTCAGCTCCATATCCCTCATCCTTCAGCAGTCTTGCCGCACCTTGCATGTTGTCATGGGCGACGAGTTCACGTTGCCCCCGCTGCCACCGCCTCCGCCGCCACAGCCGCAGCCATACGTTAATAACAAAGAGGAGATAGTTATGAGTGAGAAATCGGACTCGCAGTGGCAGGCAGAAGCATGCGGGTCGTGGATCGCGCACATGATGGAGGCCCAGGCCCAGGAGCAGAAGGCGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCAGGTGGGAGAGTGGCAGCAGCGGCGCTTACGATGCAGTAGAGGTTCAGGAGCAGCATGTGTTCGGCGATGAATCTCAGACCCAAACACAAACACAGAATTTTGGTGGGCGACGTGGCAGAAAGTCCGGCGAAAAGAGGCGTACGAAGGCGGAGAAGACCATCAGTTTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTGAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCGACAACTCTGAAAAGGATATGCAGACAGCACGGGATCACGAGGTGGCCATCGAGGAAGATAAAGAAAGTAGGACACTCTTTGAAGAAGCTTCAGCTAGTGATCGATTCGGTGCAGGGTGCAGAGGGTGCCATACAGATCGGCTCTTTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCAGTCAAAGAACAATAACAGCAGCAACAACAACTCCTCCTCCTTGTACGGCCATTCCCCACCGTCATCCTCCTCTCCTTCCACCGTGCCTCCTCAACAGCAGCACCTGTATTTCAGCACTCCCAACGTCTCCCAAACAGGTCTTCGAGTGAAGGCTACTTTTGGCGATGAAAAAATCCGTTTCAGCTTGCAACCGAAGTGGGGTTTCAGAGATTTGGAGGTTGAGATCGGAAGGCGTTTCAATGTGAAGGATTTGGGGAATTTGGTGATAAAGTATTTGGACGATGAAGGAGAATGGGTTGTTTTAGCCTGCGATGGTGATCTTGAGGAGTGCAAAGACTTGCACACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTCCTTAA 2199 0.5239 MEYGGLVQNCGFGSLWECDSASEEDSIEEVLAEGCWVETSGVGSCEAQYIGSSEAEMEVELRKRWWIGPNKVNSSVKDRLVVAVCYLRECTKNSNLMIQVWVPLRRGLVAGPEYLTRNLDDWVAVEMNMNVNMNSARDVSLRFYRSQEYPRLPYYVDLPGSLALPVFERGTNTCLGVIQILTPPCDTINYCPQLLNNNLLCNPFQAFEEVYEAAVNEIVEVMRCVCRAQNVALALSWAPCCIQQGGKCGGYGHSTENHLSTVERACFVGDAQVLGFKEASSQHHLLRGQGIVGTAFTTAKPCFAIDVAAFTRAQYPLAHHANIFGLHAAVAIPLRSLYTDFVVEFFLPKDCRDRENQSHFLSSISLILQQSCRTLHVVMGDEFTLPPLPPPPPPQPQPYVNNKEEIVMSEKSDSQWQAEACGSWIAHMMEAQAQEQKAKGVCVSLEYLEEAKEEFKVTGKCRWESGSSGAYDAVEVQEQHVFGDESQTQTQTQNFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSQSKNNNSSNNNSSSLYGHSPPSSSSPSTVPPQQQHLYFSTPNVSQTGLRVKATFGDEKIRFSLQPKWGFRDLEVEIGRRFNVKDLGNLVIKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSP 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00003 732 MobiDBLite consensus disorder prediction 484 498 - -
Vium4642g00003 732 Pfam RWP-RK domain 515 562 IPR003035 -
Vium4642g00003 732 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Vium4642g00003 732 Pfam PB1 domain 649 729 IPR000270 GO:0005515
Vium4642g00003 732 Gene3D - 644 732 - -
Vium4642g00003 732 MobiDBLite consensus disorder prediction 484 511 - -
Vium4642g00003 732 SUPERFAMILY CAD & PB1 domains 643 731 - -
Vium4642g00003 732 PANTHER PROTEIN NLP8 57 727 IPR045012 GO:0003700
Vium4642g00003 732 CDD PB1_NLP 648 729 IPR034891 -
Vium4642g00003 732 MobiDBLite consensus disorder prediction 596 634 - -
Vium4642g00003 732 ProSiteProfiles PB1 domain profile. 647 730 IPR000270 GO:0005515
Vium4642g00003 732 SMART PB1_new 647 730 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00003 Vium-Chr4642 47388 49946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00003 9 731 NLP Transcription Factor Family AT2G17150 36.313 2.61e-151 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium4642g00003 PB1 7.3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00003 - - var:108322742 1367.44