Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4642g00001 ATGGGAAACTGCTGGGGTTCTCAGCCTCACAGCGAGGTGACCCCAACAACCACCGGTAACCTCAGTACAGCCACACCGGGGATATCTCAGACCATCAGCGGCAGCACCACCACCAGCGGCAGCTATACTACTACAACAACCACAACCACAACAACTACTACTACTTCTGGAAGTGGGAACAGCTCCGTCAATAGCAAGTTCTCGGTGGCAAGCGGTGATCAACCTTATCCAACTGGGCAGATCTTACCCACCTCTAATTTGAGGATTTTCACCTTTGGTGACTTGAAGGCTGCGACTAAGAATTTCAGGGCTGATACAGTTCTTGGAGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGGCACGTCAAAGGGTGGAAGCGGAACAGTCATTGCCGTCAAAAAACTCAACTCTGAAAGCTTACAAGGAATTGAGGAGTGGCGGTCCGAAGTAAGCTTTCTAGGTCGCCTTTCCCATCCTAATCTTGTAAAACTTCTTGGTTACTGCTTGGAGGAAACTGAACTTCTTCTCGTCTATGAATTCATGCAAAAAGGAAGCCTTGAAAACCATCTATTTGGAAGGGGTTCTGCCGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGTCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGATTTTAAGGCCTCAAACATTCTGCTTGATGGGTCCTATAACGCGAAGATATCAGATTTTGGCTTGGCAAAGTTGGGTCCTTCAGCTAGTCAATCTCACGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTCAAGAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTGACAGGGCTACGAGCACTTGATTCGAACCGTCCAAGCGGGCAACATAATCTAACGGAGTGGGTGAAACCATACCTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTAAAATGTCTTGCATCTGAACCCAAACAGCGGCCTTCAATGAAGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCAGTCAATGAAAAGCCCGTGGAGCCTAAATTACGATCTAATCATACTCGTCAAGCCCACCAGGCTGTGCACCATCGTTCTCCACTTAAAGACGGTAGTTATTAG 1260 0.4683 MGNCWGSQPHSEVTPTTTGNLSTATPGISQTISGSTTTSGSYTTTTTTTTTTTTTSGSGNSSVNSKFSVASGDQPYPTGQILPTSNLRIFTFGDLKAATKNFRADTVLGEGGFGKVFKGWLEEKGTSKGGSGTVIAVKKLNSESLQGIEEWRSEVSFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALKCLASEPKQRPSMKEVLESLERIQAVNEKPVEPKLRSNHTRQAHQAVHHRSPLKDGSY 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4642g00001 419 Gene3D Transferase(Phosphotransferase) domain 1 186 408 - -
Vium4642g00001 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vium4642g00001 419 FunFam Serine/threonine-protein kinase BIK1 70 185 - -
Vium4642g00001 419 CDD STKc_IRAK 108 384 - -
Vium4642g00001 419 PANTHER OS01G0588500 PROTEIN-RELATED 51 385 - -
Vium4642g00001 419 Pfam Protein tyrosine and serine/threonine kinase 105 381 IPR001245 GO:0004672|GO:0006468
Vium4642g00001 419 Gene3D Phosphorylase Kinase; domain 1 86 185 - -
Vium4642g00001 419 MobiDBLite consensus disorder prediction 388 419 - -
Vium4642g00001 419 SUPERFAMILY Protein kinase-like (PK-like) 81 383 IPR011009 -
Vium4642g00001 419 ProSiteProfiles Protein kinase domain profile. 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4642g00001 419 ProSitePatterns Protein kinases ATP-binding region signature. 108 139 IPR017441 GO:0005524
Vium4642g00001 419 MobiDBLite consensus disorder prediction 1 70 - -
Vium4642g00001 419 FunFam Serine/threonine-protein kinase PBS1 186 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4642g00001 Vium-Chr4642 13620 16557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4642g00001 72 389 Receptor kinase-like Gene Family AT4G02010 49.068 1.20e-101 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4642g00001 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4642g00001 - - vun:114194495 757.673