Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00016 ATGGCTTCTAGAATTCTTTCCACTCTGCAGAATGTGTCTTCTTCTTCTTCTTTTGTCTCAACCACTAAACGTTGCTTAGGCCTATGTTGTCTCCGGCATAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATCGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAAATGACAGCTTATGAAAGATCACAAATAATTTTTCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGTAAGCCTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGCTTGTTCCGATATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGAGCCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCCCTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACCGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGTACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACTAAACGTGTTGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTTTGCACAATTCGAGAAGATCATGAAATACATAAGATCAGGCATTGAAAGTGGTGCTAAACTGGAATCTGGTGGTCAAAGAGTTGGCTCGAAAGGCTACTACATCGAACCAACTGTTTTCTCAAATGTTCAGGACGACATGTTGATAGCAAAAGATGAGATATTCGGTCCGGTACAATCTATCCTGAAATTCAAGTATGCTATTAGTCACTAG 1365 0.4271 MASRILSTLQNVSSSSSFVSTTKRCLGLCCLRHRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPKMTAYERSQIIFRCADILEKHNDEVAAIETWDNGKPYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADEPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMDVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQIDFAQFEKIMKYIRSGIESGAKLESGGQRVGSKGYYIEPTVFSNVQDDMLIAKDEIFGPVQSILKFKYAISH 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00016 454 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Vium4641g00016 454 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 308 IPR016162 GO:0016491
Vium4641g00016 454 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 319 - -
Vium4641g00016 454 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 449 IPR016163 GO:0016620
Vium4641g00016 454 Coils Coil 88 108 - -
Vium4641g00016 454 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Vium4641g00016 454 SUPERFAMILY ALDH-like 55 449 IPR016161 GO:0016491
Vium4641g00016 454 FunFam Mitochondrial aldehyde dehydrogenase 2 311 452 - -
Vium4641g00016 454 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 449 - -
Vium4641g00016 454 Pfam Aldehyde dehydrogenase family 67 449 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00016 Vium-Chr4641 97388 101027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00016 1 448 Aldehyde Dehydrogenase Gene Family AT3G48000 71.460 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00016 K00128 - gmx:100798892 782.711