Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00015 ATGGCTTCTAGAATTCTTTCCACTCTGCAGAATGTGTCTTCTTCTTCTTCTTTTGTCTCAACCACTAAACGTTGCTTAGGCCTATGTTGTCTCCGGCATAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATCGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAAATGACAGCTTATGAAAGATCACAAATAATTTTTCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGTAAGCCTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGCTTGTTCCGATATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGAGCCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCCCTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACCGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGTACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACTAAACGTGTTGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTTTGCACAATTCGAGAAGATCATGAAATACATAAGATCAGGCATTGAAAGTGGTGCTAAACTGGAATCTGGTGGTCAAAGAGTTGGCTCGAAAGGCTACTACATCGAACCAACTGTTTTCTCAAATGTTCAGGGATCTAGAGGAGGTGATAAGAAGGGCCAATGCAACTCATTATGGCCTGGCTGCTGGAGTTTATACTCAGAATACAGACACTGCCAATACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGA 1422 0.4339 MASRILSTLQNVSSSSSFVSTTKRCLGLCCLRHRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPKMTAYERSQIIFRCADILEKHNDEVAAIETWDNGKPYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADEPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMDVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQIDFAQFEKIMKYIRSGIESGAKLESGGQRVGSKGYYIEPTVFSNVQGSRGGDKKGQCNSLWPGCWSLYSEYRHCQYLDAGIASWNSMDQLL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00015 473 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Vium4641g00015 473 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 428 IPR016163 GO:0016620
Vium4641g00015 473 Coils Coil 88 108 - -
Vium4641g00015 473 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 319 - -
Vium4641g00015 473 FunFam Aldehyde dehydrogenase3 309 435 - -
Vium4641g00015 473 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Vium4641g00015 473 SUPERFAMILY ALDH-like 55 428 IPR016161 GO:0016491
Vium4641g00015 473 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 429 - -
Vium4641g00015 473 Pfam Aldehyde dehydrogenase family 67 428 IPR015590 GO:0016491
Vium4641g00015 473 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 308 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00015 Vium-Chr4641 97251 101027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00015 1 428 Aldehyde Dehydrogenase Gene Family AT3G48000 70.370 0.0 643