Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00014 ATGGCTTCTAGAATTCTTTCCACTCTGCAGAATGTGTCTTCTTCTTCTTCTTTTGTCTCAACCACTAAACGTTGCTTAGGCCTATGTTGTCTCCGGCATAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATCGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAAATGACAGCTTATGAAAGATCACAAATAATTTTTCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGTAAGCCTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGCTTGTTCCGATATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGAGCCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCCCTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACCGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGTACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACTAAACGTGTTGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGGGATCTAGAGGAGGTGATAAGAAGGGCCAATGCAACTCATTATGGCCTGGCTGCTGGAGTTTATACTCAGAATACAGACACTGCCAATACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGA 1284 0.4385 MASRILSTLQNVSSSSSFVSTTKRCLGLCCLRHRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPKMTAYERSQIIFRCADILEKHNDEVAAIETWDNGKPYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADEPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMDVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQGSRGGDKKGQCNSLWPGCWSLYSEYRHCQYLDAGIASWNSMDQLL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00014 427 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Vium4641g00014 427 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 385 - -
Vium4641g00014 427 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 308 IPR016162 GO:0016491
Vium4641g00014 427 Coils Coil 88 108 - -
Vium4641g00014 427 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Vium4641g00014 427 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 319 - -
Vium4641g00014 427 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 384 IPR016163 GO:0016620
Vium4641g00014 427 Pfam Aldehyde dehydrogenase family 67 384 IPR015590 GO:0016491
Vium4641g00014 427 SUPERFAMILY ALDH-like 55 384 IPR016161 GO:0016491
Vium4641g00014 427 MobiDBLite consensus disorder prediction 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00014 Vium-Chr4641 97251 101027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00014 43 382 Aldehyde Dehydrogenase Gene Family AT1G23800 76.765 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00014 K00128 - gmx:100798892 662.529