Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00012 ATGGCTTCTAGAATTCTTTCCACTCTGCAGAATGTGTCTTCTTCTTCTTCTTTTGTCTCAACCACTAAACGTTGCTTAGGCCTATGTTGTCTCCGGCATAGAAGTTTAAGTGGAACTGGTGCTTCTGCTGCTGCTGATATAGAGCCTAGCAAACCACCAGTGCAAATTGAGCATAATCAGCTTCTGATCGATGGACTGTTTGTTGATGCAGCTTCTGGAAAAACTTTTCCAACCAATGATCCTAGGACTGGAGATACAATTGCCAATGTAGCCGAAGCGGATGTTGAAGATGTAAATCGTGCTGTACGTGCTGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAAATGACAGCTTATGAAAGATCACAAATAATTTTTCGTTGTGCTGATATATTGGAGAAACACAATGATGAAGTTGCAGCAATTGAAACATGGGATAATGGTAAGCCTTATGAACAGGCTGCAAATGTTGAAATACCTATGGTGGTACGCTTGTTCCGATATTATGCAGGTTGGGCGGATAAAATTCATGGTTTAACAGTTCCAGCTGATGAGCCATACCATGTTCAAACCTTGCATGAACCTATTGGAGTAGCAGGGCAGATTGTTCCTTGGAATTTCCCACTTCTTATTTTTTCATGGAAGGTTGCACCTGCATTAGCTTGTGGTAATACAGTTGTAATGAAAACTGCAGAACAGACACCCCTTTCTGCCATTTATGTGTCAAAGCTATTTCATGAGGCAGGACTTCCTCCTGGAGTTCTGAATGTTATCAGTGGCTTTGGTCCTACTGCTGGGGCAGCTCTGTGTACTCATATGGATGTTGACAAGCTTGCTTTCACAGGATCCTCTCAGACCGGTAGACGGGTATTAGAACTCTCAGCACGCAGTAACCTGAAGCCTGTAACTCTGGAGCTGGGTGGAAAATCTCCATTCATTGTCTGCAAGGATGCTGATATCGATGCAGCTGTTGAGGCAGCACATTCTGCATTATTCTTTAATCAGGGGCAATGTTGTTGTGCTGGTTCTCGTACATTTGTTCATGAAAGCATATATGATGAATTTGTGGAAAAGGCTAAAGCTCGTGCTACTAAACGTGTTGTTGGAGACCCTTTCAAAAGTGGGGTTGAGCAAGGTCCTCAGATTGATTTTGCACAATTCGAGAAGATCATGAAATACATAAGATCAGGCATTGAAAGTGGTGCTAAACTGGAATCTGGTGGTCAAAGAGTTGGCTCGAAAGGCTACTACATCGAACCAACTGTTTTCTCAAATGTTCAGGACGACATGTTGATAGCAAAAGATGAGATATTCGGTCCGGTACAATCTATCCTGAAATTCAAGGATCTAGAGGAGGTGATAAGAAGGGCCAATGCAACTCATTATGGCCTGGCTGCTGGAGTTTATACTCAGAATACAGACACTGCCAATACCTTGATGCGGGCATTGCGAGTTGGAACAGTATGGATCAACTGCTATGATGTCTTTGATGCAGCAATACCTTTTGGTGGATATAAAATGAGTGGTCAAGGGAGAGTAAGGGGAATCTACAGCCTTAGAAGCTACCTTCAAGTTAAAGCTTCTGTCACTCCTTTGAAGAATCCTGCATGGCTCTAG 1620 0.4315 MASRILSTLQNVSSSSSFVSTTKRCLGLCCLRHRSLSGTGASAAADIEPSKPPVQIEHNQLLIDGLFVDAASGKTFPTNDPRTGDTIANVAEADVEDVNRAVRAARKAFDEGPWPKMTAYERSQIIFRCADILEKHNDEVAAIETWDNGKPYEQAANVEIPMVVRLFRYYAGWADKIHGLTVPADEPYHVQTLHEPIGVAGQIVPWNFPLLIFSWKVAPALACGNTVVMKTAEQTPLSAIYVSKLFHEAGLPPGVLNVISGFGPTAGAALCTHMDVDKLAFTGSSQTGRRVLELSARSNLKPVTLELGGKSPFIVCKDADIDAAVEAAHSALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARATKRVVGDPFKSGVEQGPQIDFAQFEKIMKYIRSGIESGAKLESGGQRVGSKGYYIEPTVFSNVQDDMLIAKDEIFGPVQSILKFKDLEEVIRRANATHYGLAAGVYTQNTDTANTLMRALRVGTVWINCYDVFDAAIPFGGYKMSGQGRVRGIYSLRSYLQVKASVTPLKNPAWL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00012 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Vium4641g00012 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 319 - -
Vium4641g00012 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
Vium4641g00012 539 Coils Coil 88 108 - -
Vium4641g00012 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Vium4641g00012 539 Pfam Aldehyde dehydrogenase family 67 528 IPR015590 GO:0016491
Vium4641g00012 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 73 528 IPR016162 GO:0016491
Vium4641g00012 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Vium4641g00012 539 CDD ALDH_F2BC 56 531 - -
Vium4641g00012 539 SUPERFAMILY ALDH-like 55 532 IPR016161 GO:0016491
Vium4641g00012 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 45 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00012 Vium-Chr4641 95296 101141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00012 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 71.271 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00012 K00128 - gmx:100798892 947.192