Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00007 ATGACAGTTATTATAACAGTGGTGCTAATATTTGTGGGATTTGTGGTCCTGATCATATTTCATGTCTGTATTTCGGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGAAGAAGCATGTCCATAGATGAGTTGGAGAAGCTCCCATGTTATGATTATGTTGCCAAAGGCAACACAAGCAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACTGGAGATAAGTGCAGGTTGTTGCCTATGTGCAAGCACAGTTTTCATGCTCAATGTGTGGACACATGGCTTCTTAAGACATCCTTATGCCCAACTTGCAGGTCTAATGCTCATTCTCACAGTGAAAACCAAGTTATAGGTAACAGTGACTACTTGGTAGCACCAAATAGTGTGTCTAGGGAGGGCCAAACTGCCACAAGAAGTCAGCAACATGACAATATGGTGGTCTTGGTACAGCTGAGAGAAAGCCTAGAAAATGGTACATCAACAAATGTTATCGTGGAAAATCCAACATTAGGAAGTCATAACTTGGTCAGAGAGGAGTAG 561 0.4367 MTVIITVVLIFVGFVVLIIFHVCISERLSRRGSMVERGANGGRSMSIDELEKLPCYDYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTSLCPTCRSNAHSHSENQVIGNSDYLVAPNSVSREGQTATRSQQHDNMVVLVQLRESLENGTSTNVIVENPTLGSHNLVREE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00007 186 SMART ring_2 70 111 IPR001841 -
Vium4641g00007 186 FunFam RING-H2 finger protein ATL2K 45 118 - -
Vium4641g00007 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vium4641g00007 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 117 IPR013083 -
Vium4641g00007 186 SUPERFAMILY RING/U-box 69 124 - -
Vium4641g00007 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 147 - -
Vium4641g00007 186 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00007 Vium-Chr4641 88180 89549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00007 50 114 C3H Transcription Factor Family AT2G18650 53.030 2.05e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00007 - K15692 gmx:102667575 298.13