Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00006 ATGATCATGGAGCTCCCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCAGCCACAGCACAATAACCACCACCAGGACGCTCGCTCAGGCCTCGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACTTATCACGAGAACCCCGGGCCGCCGCCGGGAGCCCTCGCTGCCCTCCCTAGCGGTGGTCTCGCTCCTTGCGCTGCCTGCTCCAAGCCCTGCCCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCTGGAATTCGCGGCGGAGGACGCCAGGCCGCGAGCCTGGAGGAGTGGGTCTGCGGCGAGTGCGTCGCCTCAGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTTCTCGATATCAACGCTCCGCCACCGAGCGAAGCCGAAGCCGAAGGCCTCGGCGACGGAGACGTGCATGATTTGAGAAAGCACACTCGCGGTGATAATTATTTTGGTGCCAGTCCATTTGGTGCCCCTGTGACATATTCAAACTTTTACAATGGAAATGCTACTGGCTTCCAAAAGTCTTCTGGAGGTTTGATACAGGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCGATTACTAGAAAATTTGAGGAGGCTCTTAAAGATTTTATATCTGAACGGCGCGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTTAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAATGCCGTTGAATCTGAAATAAGACATGAGAGGTCTCTTGTGTCTTTAAGTGGTTCTCTATCTAGGAAAAAAAAGTCAACAAGATCTCCCGTAGTGAATGGTTTCATGGAAAAACGGGGAACCATGATGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAATGTGCTAGTACTAGGGGGAATATCGCAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACAGTCCTTCCCTCAGCAATTTGAGAATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTGGGGAAAGTTGATGTGAGACCATCGTATTATGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGAAGGTGTTCCTGTTCCGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAACTTGCAAGTCAAGCTGATGAAGGCAATGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAAGGATACTCATACACCAGATGCATTAGGCCCTGCGACTGGTTCAGTTCAAGATAATGCTATACATTCTTTAGCTGATGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCGTGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTGATGCTTGCAAGGATTTCTGCAAACAGAAAGGAACACTGAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTACATCAATGGGATTTAGGGAATGTAAAAAGTGATGAATTGGATAAATTTTGTGGTTCCCTCGGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGTGTTGAATCTTTGCAGTATGAACTTTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTGGTTGAATGGAGAGAGGGGTCAAAACATCAGGAAGAAGCACTTCAAGGTTTATACAGGAGGTCTAAAAAGGCAAGTTTGACTAAAAAAAGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCCAGGGCTCCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAATGAAGTTCTGGACTTGCAAGAACCATTGTCATTAGATGAGCTTGAGAAGGAACTGATTAGCCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCGGAGAGGGACATGGACGAAAGTCAAGTTTTAATTTCCGAAGGAACTGATGGTAATTGCAGACCATTATTGTCCATAGGAGGTGATACTGGTCCATCAGGTTCCATGGAAGGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAGGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTACGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGGGTGCTAATAGGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAACATGCTTCCTATTAATGAGTTGACTTGGCCAGAATTAGCTCGGAGATATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAATCTGCAGAAATTACTGCCCGCGAAAGTGGTAAAGTATTTCGGTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTGCTCTTACTGGTGTGGCGGGAATGGAAGCAGATGCACAGCTACTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAACAGACAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGGTGCTTCTGAGAAAAATTTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTAGGCACTCGAATAAGAAAGTGTGTTTATGATGCTCTCAGTAAGGATCCACCAGAATGGGCAAGGAAAAAATTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGAGGGCAATCAAATCCCAGTAAAGGGCAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATGATGAAACGATGTCGCATTGTATTGCGGCGTGCTGCTGCTGCCGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCCGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTGGCCCGCCCTCTTGACTTCCGCACTATTGACCTTAGACTAGCTGCTGGAGCTTATGGTGGATCTCATGACGCTTTTCTTGAGGATGTACGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAGTTGGCTGAAAAATTATCCCAAAACTTTGAATCATTATATAATGAGGAGGTTGTCATGAATATGCAAAAACTGATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAGACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCAGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTGTCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGCCGAGAGAACTTTCCTTCTCAAATTTTTATGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTTCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTCATTTTCAAATACTGCTAAATGTCTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGATGATAGTCTGCCTTCAGAAGAGACAACTAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTGACAAATTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAGTGTACTGATAAATCTCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGTTGGAGCAGCTGATGCCCAGGGTAACCACCATAAATGTGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGCCAGTTGATGCTTCACATATGGTTTTGAATGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGCGTGATATTTCACTATTGCAAGACTCCATAACTAATGTAGTATCACAGCTGCTGAAGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCTGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTTCATGGAAAAGGAATGTCATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGATTCCTCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGTCAATAGTGCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGCAAAGACCGAAGAGCAGGTTGAGGACCAGGGACCTGTTTCTATTCCCAGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAATGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTTGAACCCATATGGCCCTATAGGAAACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAACGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAACATGTGATGGCTCACGAGAGAAATTCAGAGCTGATGCAGAAACATCTGGAACCAAAATTGGTGGTGGTTCTAAGCTTAGCTCAAGAGTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAGTGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCAGATGGTATCCCTTCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGCGAGTATGCACAATTCTCAACTTCAAAGGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAATACTGATGGAGCTGGTGCATGTCTTGACCATAATTCAGGAATTTCTACTGGTAGGTTAGCTGTCAACGAAAGCAATAAATCCATTAAATCCTCCTCCTCGGGAGAACAAAGAGATGGGAAATTCTCTTTTTGTGGTCCTGTTTCAGATATGGGAGATGGCTGCTGTGTGGTTCCTTTGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATCTTGAGGCAACTGAAGATTAATCTGCTTGATATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCATCAAAGGCCGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGGTTTGTCTTATATCCGTGGCTCTGTACTGCTACTTACCTGACTGA 6363 0.4352 MIMELPDSTGGDRNLNAPPPQPQHNNHHQDARSGLGIDLNEIPSPSSLFAETLPDSVTDVVRTYHENPGPPPGALAALPSGGLAPCAACSKPCPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVASGVKSKRWPLGVKQLLDINAPPPSEAEAEGLGDGDVHDLRKHTRGDNYFGASPFGAPVTYSNFYNGNATGFQKSSGGLIQADRVGFEDILNHTQSITRKFEEALKDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNAVESEIRHERSLVSLSGSLSRKKKSTRSPVVNGFMEKRGTMMNSNCKDPSSEGLNVECASTRGNIAKPYESGRKEDGQSFPQQFENELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSLSKCCQLASQADEGNGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNAIHSLADEFNDGIGEFCVEERSSCSAWRVISQKLVDACKDFCKQKGTLKFYCNHVKNETCLHQWDLGNVKSDELDKFCGSLGSVGIPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWREGSKHQEEALQGLYRRSKKASLTKKSFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLQEPLSLDELEKELISPWFDGLDFLEKSERDMDESQVLISEGTDGNCRPLLSIGGDTGPSGSMEGSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSRVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGALTGVAGMEADAQLLAEATKKIFGSLNRQSDVLTMEEEESDAKGASEKNLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALSKDPPEWARKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGGQSNPSKGQKRKIVISISDIMMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHDAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNMQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSMIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTFSLNTSGEVGLREGVTTSFSNTAKCLVQPHTAVDNPSNFGVFDDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGAVESQCTDKSPKSFPSPNMSQEINGSVGAADAQGNHHKCEGRDMSTPVTCQQGGVPVDASHMVLNESEPYHLELNAIKRDISLLQDSITNVVSQLLKLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVEKFSVLQNCSLTEKDSSPFMSQLRNALVNSAPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNAKTEEQVEDQGPVSIPRNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTNDEKLFRCECLEPIWPYRKHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLTCDGSREKFRADAETSGTKIGGGSKLSSRVIKFSNEESTCPFNFEDICSKFETSDSNKELVKEIGLIGSDGIPSFVPSVSPFVSEYAQFSTSKDDIIGVLSKPTESWGSQGNTDGAGACLDHNSGISTGRLAVNESNKSIKSSSSGEQRDGKFSFCGPVSDMGDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEVCLISVALYCYLPD 2120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00006 2120 CDD PHD1_Lid2p_like 1275 1320 - -
Vium4641g00006 2120 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1355 1399 IPR028942 -
Vium4641g00006 2120 PANTHER OS02G0192300 PROTEIN 21 2108 - -
Vium4641g00006 2120 MobiDBLite consensus disorder prediction 1 39 - -
Vium4641g00006 2120 SUPERFAMILY Bromodomain 1110 1230 IPR036427 GO:0005515
Vium4641g00006 2120 ProSiteProfiles Bromodomain profile. 1166 1214 IPR001487 GO:0005515
Vium4641g00006 2120 MobiDBLite consensus disorder prediction 893 910 - -
Vium4641g00006 2120 Pfam Methyl-CpG binding domain 246 297 IPR001739 GO:0003677
Vium4641g00006 2120 Coils Coil 1394 1414 - -
Vium4641g00006 2120 SMART PHD_3 85 139 IPR001965 -
Vium4641g00006 2120 SMART PHD_3 1275 1321 IPR001965 -
Vium4641g00006 2120 SUPERFAMILY FYVE/PHD zinc finger 83 150 IPR011011 -
Vium4641g00006 2120 Pfam Bromodomain 1164 1219 IPR001487 GO:0005515
Vium4641g00006 2120 ProSiteProfiles Zinc finger PHD-type profile. 1273 1323 IPR019787 -
Vium4641g00006 2120 ProSitePatterns Zinc finger PHD-type signature. 86 138 IPR019786 -
Vium4641g00006 2120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 144 IPR013083 -
Vium4641g00006 2120 ProSiteProfiles Zinc finger PHD-type profile. 83 141 IPR019787 -
Vium4641g00006 2120 SUPERFAMILY FYVE/PHD zinc finger 1264 1325 IPR011011 -
Vium4641g00006 2120 MobiDBLite consensus disorder prediction 14 30 - -
Vium4641g00006 2120 Gene3D - 1117 1240 IPR036427 GO:0005515
Vium4641g00006 2120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1260 1344 IPR013083 -
Vium4641g00006 2120 ProSitePatterns Zinc finger PHD-type signature. 1276 1320 IPR019786 -
Vium4641g00006 2120 MobiDBLite consensus disorder prediction 890 910 - -
Vium4641g00006 2120 Gene3D - 389 491 - -
Vium4641g00006 2120 ProSiteProfiles FYR domain FYRN motif profile. 388 441 IPR003888 GO:0005634
Vium4641g00006 2120 Pfam PHD-finger 1275 1321 IPR019787 -
Vium4641g00006 2120 CDD PHD_SF 86 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00006 Vium-Chr4641 56639 78860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00006 29 2114 C2H2 Transcription Factor Family AT3G01460 44.037 0.0 1603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium4641g00006 Bromodomain 5.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00006 K22768 - gmx:100820223 3282.66