Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00004 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTGTGCTTCTCGCGGGAACACCAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTCCGAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTTTTCACCTCACCGGATGAACTGTATGACGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAACCAAGGCAGGTAGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTCGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTTCTTTCATCCTATGATTCACTCATGAAGGAGAATGAGAAACTGAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAAGCATTGTATGACAAGAAAGTTGATCCACTTCCGGTAGAAGATATAGCTTCAATTTTCAGCACAAGGGTAGAGGACCACCAGAGCAGTGGGTCTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCACAGCTGGTGGTTGACAGTGTTGATTCACACTTTCCGGCTGAGAACCCTGGTGGATGTGTGGGCCCAGTTGAAAGAGTTCAGTCGGAGGAGGAGGATGGAAGTGATGATGGGAGGAGTTACATGGATGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGGATTGGTTTGGTGGACCAATATGTATTATGTTGGATAA 855 0.4807 MESGRLFFDACASRGNTNMLFLGNTELAFRGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKENEKLKSEVVSLNEKLQVQAKEVPEEALYDKKVDPLPVEDIASIFSTRVEDHQSSGSVGSAVVDEGSPQLVVDSVDSHFPAENPGGCVGPVERVQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEGLVWWTNMYYVG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00004 284 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Vium4641g00004 284 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Vium4641g00004 284 SMART HOX_1 63 125 IPR001356 GO:0003677
Vium4641g00004 284 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Vium4641g00004 284 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Vium4641g00004 284 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Vium4641g00004 284 Coils Coil 134 168 - -
Vium4641g00004 284 CDD homeodomain 66 122 IPR001356 GO:0003677
Vium4641g00004 284 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Vium4641g00004 284 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Vium4641g00004 284 MobiDBLite consensus disorder prediction 225 252 - -
Vium4641g00004 284 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Vium4641g00004 284 Gene3D - 63 128 - -
Vium4641g00004 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 207 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00004 Vium-Chr4641 50385 53869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00004 1 277 Homeobox Transcription Factor Family AT3G01470 56.184 1.15e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4641g00004 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00004 K09338 - gmx:100797836 511.916