Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4641g00003 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTGTGCTTCTCGCGGGAACACCAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTCCGAGCAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTTTTCACCTCACCGGATGAACTGTATGACGAGGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAACCAAGGCAGGTAGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTCGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTTCTTTCATCCTATGATTCACTCATGAAGGAGAATGAGAAACTGAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAAGCATTGTATGACAAGAAAGTTGATCCACTTCCGGTAGAAGATATAGCTTCAATTTTCAGCACAAGGGTAGAGGACCACCAGAGCAGTGGGTCTGTTGGAAGTGCAGTGGTGGATGAGGGTAGTCCACAGCTGGTGGTTGACAGTGTTGATTCACACTTTCCGGCTGAGAACCCTGGTGGATGTGTGGGCCCAGTTGAAAGAGTTCAGTCGGAGGAGGAGGATGGAAGTGATGATGGGAGGAGTTACATGGATGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGGATTGGTTTGGTGGACCAATATGTATTATGTTGGATAA 858 0.4814 MESGRLFFDACASRGNTNMLFLGNTELAFRAGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKENEKLKSEVVSLNEKLQVQAKEVPEEALYDKKVDPLPVEDIASIFSTRVEDHQSSGSVGSAVVDEGSPQLVVDSVDSHFPAENPGGCVGPVERVQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEGLVWWTNMYYVG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4641g00003 285 Pfam Homeodomain 67 120 IPR001356 GO:0003677
Vium4641g00003 285 Coils Coil 135 169 - -
Vium4641g00003 285 CDD homeodomain 67 123 IPR001356 GO:0003677
Vium4641g00003 285 FunFam Homeobox-leucine zipper protein HAT5 60 124 - -
Vium4641g00003 285 MobiDBLite consensus disorder prediction 226 253 - -
Vium4641g00003 285 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Vium4641g00003 285 Pfam Homeobox associated leucine zipper 122 164 IPR003106 GO:0006355|GO:0043565
Vium4641g00003 285 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Vium4641g00003 285 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Vium4641g00003 285 Gene3D - 64 129 - -
Vium4641g00003 285 SUPERFAMILY Homeodomain-like 54 124 IPR009057 -
Vium4641g00003 285 SMART HOX_1 64 126 IPR001356 GO:0003677
Vium4641g00003 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 208 IPR045224 GO:0003700
Vium4641g00003 285 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4641g00003 Vium-Chr4641 50384 53869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4641g00003 1 278 Homeobox Transcription Factor Family AT3G01470 56.184 6.67e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4641g00003 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4641g00003 K09338 - gmx:100797836 507.294