Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4640g00010 ATGATGAAGGGGGAACCACCGGCAGCGCTCCTCATGTCGGTTTCCTGCATCTCCGATTACGACCTCCTCTGCGCCGACGAAAGCTCCGGCATCCTCTCCGGAGAGTCGCCGGAATGTTCGTCCGATGTAGACTCCACTTCCCCGCCGCCGTCGCCGCTACCTTCCTCAGAAGACTATTCAATCGCTAGTTTCATCGAACACGAGCGCAACTTTGTCCCCGGATTCGACTACCTCTCAAGGTACCAATCTCGCTCCCTCGACGCCAACGCCAGAGAGGAATCCGTTGCATGGATTCTCAAGGTACACGCGTATTATGGCTTTCAACCTCTAACGGCGTACCTTGCCGTCAACTATATGGATCGGTTTATGGATTCTCGCGATTTACCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCAGCAAAGATGGAGGAACCTCTGGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCAAAGTACTTATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTGGGAGTTTTGGATTGGAGGCTAAGATCAGTAACCCCACTTTGTTTTCTCGCTTTCTTTGCGTGCAAAATAGATTCAACAGGAGCTTTTACCGGGTTCCTCATTTCCCGGGCCACAGAAATCATCGTGGCTAATATCCAAGAGGCTGGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCCGCAGCCATACTTTCCGCGGCTAAGGAAATTCCTAATTGGGCTGTCCTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAATTATTGGGTGCTACCAGTTGATGCAAGAACTTGTGGTTAACAGTAACCGCAGAAAACTCCCTTTGGTGTTGCCGCAGTTGCGAGTAACAACTCGGACTCGAATGAGATCAAGTGTCTCATCATTCTCATCGTCATCCTCTTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGACAAAAACTCCGAGTGA 1035 0.4899 MMKGEPPAALLMSVSCISDYDLLCADESSGILSGESPECSSDVDSTSPPPSPLPSSEDYSIASFIEHERNFVPGFDYLSRYQSRSLDANAREESVAWILKVHAYYGFQPLTAYLAVNYMDRFMDSRDLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYLFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKIDSTGAFTGFLISRATEIIVANIQEAGFLAYRPSCIAAAAILSAAKEIPNWAVLKPEHAESWCEGLRKEKIIGCYQLMQELVVNSNRRKLPLVLPQLRVTTRTRMRSSVSSFSSSSSFSLSCKRRKLNNCLWVDDKNSE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4640g00010 344 Pfam Cyclin, C-terminal domain 193 300 IPR004367 -
Vium4640g00010 344 SUPERFAMILY Cyclin-like 175 288 IPR036915 -
Vium4640g00010 344 SMART cyclin_7 96 184 IPR013763 -
Vium4640g00010 344 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vium4640g00010 344 FunFam D2/4-type cyclin 74 191 - -
Vium4640g00010 344 PANTHER CYCLINS 61 291 IPR039361 -
Vium4640g00010 344 CDD CYCLIN_AtCycD-like_rpt1 90 188 - -
Vium4640g00010 344 Gene3D - 74 191 - -
Vium4640g00010 344 Gene3D - 63 254 - -
Vium4640g00010 344 Pfam Cyclin, N-terminal domain 62 190 IPR006671 -
Vium4640g00010 344 SMART Cyclin_C_2 193 326 IPR004367 -
Vium4640g00010 344 CDD CYCLIN_AtCycD-like_rpt2 193 283 - -
Vium4640g00010 344 SUPERFAMILY Cyclin-like 60 190 IPR036915 -
Vium4640g00010 344 ProSitePatterns Cyclins signature. 91 122 IPR006671 -
Vium4640g00010 344 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4640g00010 Vium-Chr4640 73572 77712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4640g00010 10 343 Core Cell Cycle Gene Families AT1G70210 60.714 3.58e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4640g00010 K18810 - gmx:100818190 536.569