Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4632g00002 ATGGGTGGGCAATCTCTGCATGTGCTTAATGCACTGGATGTTGCTAAGACACAATGGTATCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTCTTCACTGATTCTTATGACCTGTTCTGCATATCCCTTGTCACCAAATTACTTGGCCGCATATACTACACTGAAGGCCATGATAAGCCGGGTTCTCTGCCAGCAAATGTTTCAGCTGCCATCAATGGTGTCGCATTCTGTGGATCCCTTGCAGGCCAACTTTTCTTTGGGTGGCTTGGTGACAAAATGGGAAGGAAGCGTGTCTACGGGATGACCCTTATGCTCATGGTCGTAAGTTCAATTGCTTCTGGTCTTTCCTTTGGCAAAGACCAAAAAGCTGTCATGGCTACCCTTTGCTTCTTCCGCTTCTGGCTTGGATTTGGCATTGGTGGAGACTACCCTCTTTCCGCCACCATCATGGCTGAGTATGCCAACAAGAAGACTCGTGGAGCGTTCATAGCTGCTGTTTTTGCCATGCAAGGTTTTGGAATTTTGGCTGGTGGCCTGGTTGCAATAGTAGTGTCAGCTGCTTTCGGTGCTCTCTACCCTGCTCCAACATTCCAGGTCAACCCACTTCTGTCCACAGTGCCACAAGCTGATTACGTTTGGAGGATAATCTTGATGTTTGGTGCAATCCCTGCTGTGATCACATACTATTGGCGCATGAAAATGCCCGAGACTGCGAGATACACTGCCTTGGTTGCCAAGAATACGAGGCAAGCTGCTGCAGATATGTCAAAGGTGTTGCAAGTTGAGATAGAAGCAGAACCAGAGAAAATTGAGATAGAAAATGAACAAGAGAAAGTTGAGGAATTGAACGGAAGAAGAGGAAAGGGGAATGAGTTTGGCCTGTTCACTAAAGAGTTCCTTCTACGCCATGGACTTCACCTTGTTGGAACAGCCAGTACTTGGTTCCTGTTGGACATTGCCTATTACAGTCAGAATCTTTTTCAGAAAGACGTTTTCAGTGCTATTGGTTGGATTCCTGCAGCAAAAACCATGAATGCCATTCAAGAGGTTTCCAAAATTGCTAGAGCACAGACCCTCATAGCCCTTTGCAGTACTGTCCCTGGTTACTGGTTCACAGTGGCACTCATTGATAAGATGGGCAGGTTTACAATTCAGTTGATGGGGTTTTTCTTTATGACTGTCTTCATGCTTGCCTTAGCCATTCCATACCACCACTGGACCGTGAGCGGCAACCAAATTGGGTTTGTTGTCCTATATTCATTGACCTTCTTCTTTGCCAATTTTGGTCCAAATGCCACAACATTCGTGGTGCCAGCAGAGATTTTCCCTGCAAGACTAAGGTCAACATGTCATGGCATATCGGCTGCAGCTGGGAAAGCTGGGGCAATGGTAGGGGCTTTTGGCTTCCTCTATGCTCAAAACGGCATTGGACTAAGAAATACACTTCTTATTTTGTCTGGCATTAACTTCTTGGGGCTTATCTTTACGTTTCTGATTCCTGAATCTAAAGGAAAATCGCTGGAGGAGATGTCTGGTGAAGCTGAACAAAACAATACTCCTACAAGAGAATCAGCAATGGAAGCCGGTCTTGAAGTTAGAACATCTGTCTAA 1614 0.4566 MGGQSLHVLNALDVAKTQWYHFTAIVIAGMGFFTDSYDLFCISLVTKLLGRIYYTEGHDKPGSLPANVSAAINGVAFCGSLAGQLFFGWLGDKMGRKRVYGMTLMLMVVSSIASGLSFGKDQKAVMATLCFFRFWLGFGIGGDYPLSATIMAEYANKKTRGAFIAAVFAMQGFGILAGGLVAIVVSAAFGALYPAPTFQVNPLLSTVPQADYVWRIILMFGAIPAVITYYWRMKMPETARYTALVAKNTRQAAADMSKVLQVEIEAEPEKIEIENEQEKVEELNGRRGKGNEFGLFTKEFLLRHGLHLVGTASTWFLLDIAYYSQNLFQKDVFSAIGWIPAAKTMNAIQEVSKIARAQTLIALCSTVPGYWFTVALIDKMGRFTIQLMGFFFMTVFMLALAIPYHHWTVSGNQIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGFLYAQNGIGLRNTLLILSGINFLGLIFTFLIPESKGKSLEEMSGEAEQNNTPTRESAMEAGLEVRTSV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4632g00002 537 Coils Coil 266 286 - -
Vium4632g00002 537 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 505 IPR020846 GO:0022857
Vium4632g00002 537 MobiDBLite consensus disorder prediction 509 537 - -
Vium4632g00002 537 NCBIfam phosphate:H+ symporter 11 514 IPR004738 GO:0005315|GO:0006817|GO:0016020
Vium4632g00002 537 Pfam Sugar (and other) transporter 25 512 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vium4632g00002 537 SUPERFAMILY MFS general substrate transporter 12 512 IPR036259 -
Vium4632g00002 537 CDD MFS_PhT 25 504 - -
Vium4632g00002 537 Gene3D MFS general substrate transporter like domains 20 265 IPR036259 -
Vium4632g00002 537 Gene3D MFS general substrate transporter like domains 288 529 IPR036259 -
Vium4632g00002 537 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4632g00002 Vium-Chr4632 23707 26242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4632g00002 1 519 Inorganic Solute Cotransporters AT3G54700 76.173 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4632g00002 K08176 - gmx:100792711 932.554