Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium462g00002 ATGGGGTGCATCTGCTCAAAAGAAAACAAAGACAAAGTTGATGAGTATGAGAAAGAGAAAGAAAGAGAAAAAGAGTCGAACAAGTCTTCAGTGCAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTCAGATAGTACTAGAGGCACGGATGGTTCGGTTCCCCTTATTGTTGACACATCAACACAAGCAATTAGAGGGTCTGTCGTAGTGACTGCAGAGGATAAAAGCAACCACTCAGATGCCACACAAGGCCAGCAGAAGAGGCGCGTGACAGTGAGTTGTGGTGTAGATGACAGAATGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCCGGATGGCCGATTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGGCCAAGTTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAGAAGGTTCGGTTTTCAAGTGCAGATGTGGAAAGTGTTCGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCCAATGTCATGAAGCTCGAGGGTCTTGTTACTTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTCGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAATCACAGATAAAATGTTTTCTGCAGCAACTGCTTCGTGGGCTTCAACATTGCCACAGTCGTGGTGTGCTGCACCGTGACATCAAGGGTTCAAATCTTCTTATTGACAACAATGGAAATCTTAAAATAGGAGATTTTGGTCTTGCAACAGTATATGATCCTGAAAAAAAGCAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGTGAAGCAATTGACTTGTGGAGTGTTGGTTGCATTCTGGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCACCATCTGAAGACTATTGGCAGAGAACAAAATTTCCTCATGCAACAAGTTTTAAGCCACAACACACTTACAACCGCCAAATTTCAGAAACATTTGAAAAATTTTCTTCTCCGGCATTGGCTCTTGTTGATAAGCTTCTGACAATAGAACCAGAGGCTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGAACCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGACAAAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCGGTTTTAAGAGGAGCAGGAGATACCAAGGCACTGGGTTCGCCACAGTATAACGCTCAGGGAAATATATCTATGCTGAGGAAACCAAACAGTATAATGTGCCGTCAAAAATATCTGTGCCAGGAGAATAGGGAGGCCAAGGAGAACGGTGAAGGAGGCAGAGTAAGTGTACACGGTGGCTTCACGCATGCTGCTACAATGACGCGAGGCAGTGTAGCAGGATCATCCACATTGAGCAAGAGAGTAGAACCATCTTTGAAGAATCAGAGGTCTCATTTGAATCCTGCAACAGCAGATTTATGTACCTCTGCCCTCAAAAAGGAACCAGACTCGTCTGCTGTTGAATCCACCATGGGTTATATGCCGAAGAAAAATAGGATACACTACTCTGGACCATTGATGCCTCCGGGTGGGAACCTCGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCTGTAA 1908 0.4513 MGCICSKENKDKVDEYEKEKEREKESNKSSVQLVAPSVSTAQSDSTRGTDGSVPLIVDTSTQAIRGSVVVTAEDKSNHSDATQGQQKRRVTVSCGVDDRMPMMSRILSVQHIAGEQVDSGWPIWLSSVAAEAIKGWVPRRADSFEKLGQVGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATVHGLKLTESQIKCFLQQLLRGLQHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGEAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPQHTYNRQISETFEKFSSPALALVDKLLTIEPEARGSATSALESEFFTTNPLPCEPSSLPKFSPSKEFDSKRRQKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAQGNISMLRKPNSIMCRQKYLCQENREAKENGEGGRVSVHGGFTHAATMTRGSVAGSSTLSKRVEPSLKNQRSHLNPATADLCTSALKKEPDSSAVESTMGYMPKKNRIHYSGPLMPPGGNLDDMLREHEKLMQDVFRSVKKANL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium462g00002 635 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Vium462g00002 635 CDD STKc_CDK9_like 144 428 - -
Vium462g00002 635 Gene3D Phosphorylase Kinase; domain 1 131 226 - -
Vium462g00002 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vium462g00002 635 SUPERFAMILY Protein kinase-like (PK-like) 137 435 IPR011009 -
Vium462g00002 635 MobiDBLite consensus disorder prediction 29 54 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 71 91 - -
Vium462g00002 635 Pfam Protein kinase domain 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium462g00002 635 SMART serkin_6 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium462g00002 635 FunFam probable serine/threonine-protein kinase At1g54610 227 468 - -
Vium462g00002 635 FunFam probable serine/threonine-protein kinase At1g54610 131 226 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 446 464 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 1 54 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 540 567 - -
Vium462g00002 635 Coils Coil 6 33 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 7 28 - -
Vium462g00002 635 Gene3D Transferase(Phosphotransferase) domain 1 227 468 - -
Vium462g00002 635 ProSiteProfiles Protein kinase domain profile. 144 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium462g00002 635 PANTHER CELL DIVISION PROTEIN KINASE 142 434 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 71 90 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 538 567 - -
Vium462g00002 635 MobiDBLite consensus disorder prediction 432 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium462g00002 Vium-Chr462 14883 19495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium462g00002 136 467 Core Cell Cycle Gene Families AT5G10270 50.575 1.22e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium462g00002 Pkinase 4.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium462g00002 K08819 - gmx:100791743 917.916