Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4628g00010 ATGAGTAAGGAATCTGGTCTGAACAAAGAAAGCACATCAATGAATGACACCATGGTGGAAGAGGTTGAAGAAAGAGATCCAGAAAGCAATCCACTGAATGAGCCTCTGCTCAAGAGGAACAGGACATTGTCTTCCAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATCAATGAGAATGATCTGTTCAAACAAGATTGGAGGAGCAGATCAAGAACTCAAGTGTTGCAGTACATATTCTGGAAATGGGCTCTTGCATTCCTTGTTGGACTTCTCACTGGTGTCATAGCCACTTTGATCAATCTTGCTATAGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTGTCAACTTTATCCAAAAGGAAAGGTACTTGACAGGGTTCCTATATTTCACTGGAGCTAATTTCATTTTGACATTTGTTGCTTCTATTCTGTGTGTGTGTTTTGCACCCACAGCTGCTGGACCTGGAATACCAGAAATCAAAGCTTATCTTAATGGGGTTGATACTCCCAACATGTATGGTGCCACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTATCTGCAGGCCTAGATTTAGGAAAAGAAGGGCCCTTGGTACACATTGGTAGCTGCATTGCTTCATTACTTGGTCAAGGTGGCCCTGACAATTACAGGATCAAGTGGCGGTGGTTGAGGTATTTCAACAATGATCGTGACCGTAGGGATCTCATCACCTGTGGTGCTTCTTCAGGGGTCTGTGCAGCTTTCAGGGCACCAGTGGGCGGAGTTCTCTTTTCTCTTGAGGAGGTGGCAACATGGTGGAGAAGTGCTCTCCTCTGGAGAACTTTTTTCAGCACAGCTGTGGTTGTGGTTGTGCTTAGGACAACCATTGAACTTTGCCACAAAGGAAAATGTGGCCTTTTCGGTGAAGGGGGGCTCATCATGTTTGATGTGAGTGATGTCACTGTGAATTACAATGTAATCGATATCATCCCTGTTGTTATCATTGGAGTCCTTGGTGGGGTATTGGGAAGCCTTTACAACTACCTTCTGCATAAAGTCCTCCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATGTACAAGCTCCTCCTCAGTCTTTCAGTTGCACTCTTCACATCAATATGCCAATATTGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATCCTTCCCTTTCAGAAGTGTGTCCTACAAACGGACGTTCTGGAAACTTCAAACAATTCAACTGCCCAAATGGCTACTACAATGATCTTGCAACTCTGCTTCTGACCACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCTTTTGAGTACCAACCTTTCTCCATCGTAATTTTCTTTGGACTCTATTGCATACTAGGACTAATCACCTTTGGGATTGCTGTGCCATCAGGGCTCTTCCTACCAATCATTCTCATGGGTTCAGGTTATGGCAGACTTCTTGGAATGCTCATGAGACCTCATACAAACATTGATCAAGGCCTGTTTGCAGTCCTTGGTGCAGCATCACTAATGGCGGGGTCCATGAGAATGACTGTGTCCCTTTGTGTGATCTTCCTTGAACTAACCAACAACCTTCTCCTACTACCAATAACCATGATTGTTCTCCTCATAGCTAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATCCTGCACTTGAAAGGCCTCCCTTTCATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAACTTGTTGATGTGAAGCCAGCAGTGATCAGCTTTAGAGGAGTAGAAAATGTAGCCAATATAGTCAATGCCCTGAGAAACACCACACATAATGGTTTTCCTGTCATGGACTGTGGAGTGGTGCCAGCAACAGGAGTGGCCAGTGAGGCTACAGAACTTCATGGAATCATTCTAAGAGCACACCTTATTCAGGTGCTCAAGAAGAAGTGGTTCTTGAAGGAGAAAAGGAGAACTGAGGAATGGGAAGTGAGAGAGAAATTTACATGGGTAGAGCTGGCTGAGAGAGAAGGGAACATTGAAGATGTGGCTGTGACTAAAGAAGAAATGGAGATGTTTGTTGATCTACACCCTCTCACCAACACAACTCCCTTCACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCCATGGTTCTCTTCAGACAAGTAGGACTTCGTCATATGCTTGTTGTGCCAAAATATCAAGCATCTGGGGTGTCTCCTGTGATTGGGATCTTGACGAGGCAGGATCTTCTGGCACACAACATTCTGACAGTGTTTCCTCAATTGTCAAAACCAAAGAGGAAGTGA 2349 0.4427 MSKESGLNKESTSMNDTMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWALAFLVGLLTGVIATLINLAIENIAGYKLLAVVNFIQKERYLTGFLYFTGANFILTFVASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRTTIELCHKGKCGLFGEGGLIMFDVSDVTVNYNVIDIIPVVIIGVLGGVLGSLYNYLLHKVLRLYNLINQKGKMYKLLLSLSVALFTSICQYCLPFLAKCTPCDPSLSEVCPTNGRSGNFKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTNTPFEYQPFSIVIFFGLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGMLMRPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVISFRGVENVANIVNALRNTTHNGFPVMDCGVVPATGVASEATELHGIILRAHLIQVLKKKWFLKEKRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPQLSKPKRK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4628g00010 782 MobiDBLite consensus disorder prediction 1 15 - -
Vium4628g00010 782 Pfam Voltage gated chloride channel 147 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 SUPERFAMILY Clc chloride channel 68 582 IPR014743 -
Vium4628g00010 782 CDD ClC_6_like 59 580 - -
Vium4628g00010 782 PRINTS Plant CLC chloride channel signature 307 314 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4628g00010 782 PRINTS Plant CLC chloride channel signature 275 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4628g00010 782 PRINTS Plant CLC chloride channel signature 64 72 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4628g00010 782 PRINTS Plant CLC chloride channel signature 289 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4628g00010 782 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium4628g00010 782 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 529 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 254 273 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 159 176 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 567 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 PRINTS Chloride channel signature 511 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium4628g00010 782 Pfam CBS domain 715 765 IPR000644 -
Vium4628g00010 782 SMART cbs_1 716 769 IPR000644 -
Vium4628g00010 782 SMART cbs_1 602 661 IPR000644 -
Vium4628g00010 782 FunFam Chloride channel ClC3 82 400 - -
Vium4628g00010 782 MobiDBLite consensus disorder prediction 1 36 - -
Vium4628g00010 782 ProSiteProfiles CBS domain profile. 713 777 IPR000644 -
Vium4628g00010 782 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 770 - -
Vium4628g00010 782 Gene3D - 583 772 IPR046342 -
Vium4628g00010 782 SUPERFAMILY CBS-domain pair 584 766 IPR046342 -
Vium4628g00010 782 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 767 - -
Vium4628g00010 782 MobiDBLite consensus disorder prediction 16 32 - -
Vium4628g00010 782 Gene3D Clc chloride channel 82 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4628g00010 Vium-Chr4628 104024 109034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4628g00010 23 780 Ion Channels AT3G27170 79.420 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4628g00010 K05016 - gmx:778094 1430.23