Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4621g00001 ATCGGTGACCTGATTTTTATCTATGGTGGTTTGCGTGGGGGGGTCTTGCTGGACGATCTACTTGTTGGAGATCTTGCTGCTGCTGAAACAACAGCTGCTGCTTCACATGCAGCAGCTGCAGCTGCATCTAATGTACAAGCTGGACGACTACCAGGACGATATGGTGGATTTGTTGATGATAGGACAAGGCAAACCATGATTGAAGCAACTCCGGATGGTGCTGTTGTTTTGGGAAATCGTGCACCCCCTGTAAATGGGGACCATACTACTGATATCAGCACTAAAAATGCCTTACTCCCAGGATCTAGGCGAACAAGCAAAGGAGTTGAATATCTAGTTGAAGCATCAGCCGCAGAAGCTGAAGCTATTAGTGCCACACTGGCTGCTGCCAAAGCACGGCAAGTAAATGGGGAAGTTGAATTGCCTGACGAGGATCGTGGGGCTGAGGGGCAAACACCTAGTGGGAAACAAATATATTCCTTGATTAAGCCTGATTCTTCTGCGTCAAATAGCATTCCTCCTGGTGGAGTGATGGTGTATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAGAATGAAGGCAGGCGAGTCAGTTATGGGACTCCTGAAAGTGCAACAGCTGCTAGGAAGTTATTAGATCGGCAGATGTCTATCAATAGTGTACCAAAGAAGGTTGTAGCTCACCTCTTAAAGCCACGTGGTTGGAAACCTCCGGTTCGGCGACAGTTTTTCTTGGACTGCAATGAAATTGCGGATCTTTGTGATAGTGCAGAACGAATATTTTCAAGTGAACCAAGCGTCATACAGCTTAGGGCTCCAATTAAAATATTTGGTGATTTACATGGGCAATTTGGAGATCTCATGCGCCTCTTTGATGAGTATGGCTCACCATCCACGGCTGGTGACATAGCATACATCGACTATCTATTCCTTGGAGATTATGTTGATAGGGGTCAACACAGCCTGGAAACTATTAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCAAACAACGTACATTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGATTCCGAATAGAGTGCATCGAGAGGATGGGTGAGAGAGATGGAATTTGGGCATGGCACCGTATAAACCGTCTGTTTAATTGGCTTCCTCTGGCAGCACTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAACCACGTTGAACAAATTGAGAATATTCAGCGTCCAATTACGATGGAAGCAGGATCAATCGTGCTTATGGATCTATTGTGGTCTGACCCTACAGAGAATGACAGTGTGGAAGGGCTGCGGCCAAATGCTCGGGGTCCAGGATTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAATGATCTTCAGCTGATTGTTCGGGCACATGAATGTGTGATGGATGGCTTTGAGCGATTTGCTCAGGGACATTTGATCACACTTTTTTCTGCGACAAACTACTGTGGTACGGCAAATAATGCTGGGGCGATTTTAGTTTTGGGAAGAGATCTTGTTGTGGTTCCTAAATTGATTCATCCATTACCACCTGCAATTTCTTCACCGGAAACTTCACCGGAGCGACACATTGAGGACACATGGATGCAGGAGTTGAATGCCAACAGACCACCAACACCAACTAGAGGCCGTCCTCAAGTAACAAATGACCGAGGTTCTCTTGCTTGGATATAA 1779 0.4559 IGDLIFIYGGLRGGVLLDDLLVAXDLAAAETTAAASHAAAAAASNVQAGRLPGRYGGFVDDRTRQTMIEATPDGAVVLGNPXAPPVNGDHTTDISTKNALLPGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDEDRGAEGQTPSGKQIYSLIKPDSSASNSIPPGGVMVYHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVIQLRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4621g00001 594 SUPERFAMILY Metallo-dependent phosphatases 249 554 IPR029052 -
Vium4621g00001 594 FunFam Serine/threonine-protein phosphatase 227 567 - -
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 397 423 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 326 353 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 427 454 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 487 507 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 359 383 IPR006186 GO:0016787
Vium4621g00001 594 PRINTS Serine/threonine phosphatase family signature 509 525 IPR006186 GO:0016787
Vium4621g00001 594 SMART pp2a_7 263 547 IPR006186 GO:0016787
Vium4621g00001 594 MobiDBLite consensus disorder prediction 570 585 - -
Vium4621g00001 594 Pfam Calcineurin-like phosphoesterase 291 498 IPR004843 GO:0016787
Vium4621g00001 594 MobiDBLite consensus disorder prediction 140 159 - -
Vium4621g00001 594 MobiDBLite consensus disorder prediction 78 101 - -
Vium4621g00001 594 MobiDBLite consensus disorder prediction 570 589 - -
Vium4621g00001 594 CDD MPP_Bsu1_C 243 545 IPR041758 -
Vium4621g00001 594 Gene3D - 225 567 IPR029052 -
Vium4621g00001 594 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 594 - -
Vium4621g00001 594 ProSitePatterns Serine/threonine specific protein phosphatases signature. 360 365 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4621g00001 Vium-Chr4621 53 13203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4621g00001 255 490 Calmodulin-binding Proteins AT5G63870 29.044 3.03e-27 110