Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4620g00007 ATGAGAGGAAGGAGCTATAGTCCTTCGCCTCCGCGTTACAGCAGAAGAGGCGGAGGGAGGAGTCCCAGCCCTAGAGGCCGCTACCCTCCCCGCCCCCGACAACCAGATCTTCCTACCAGCCTTCTTGTTCGTAACCTTCGCCACGACTGCAGGCCCGAGGATCTTCGCAGACCATTTGGTCAATTTGGTCCTCTGAAGGACATTTACCTGCCTAAGGATTACTACTCTGGAGAACCTCGTGGGTTTGGTTTTGTCCAATACGTCGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGCCAAATTCTTCTTGGTCGGGAGCTCACTGTCGTCTTTGCCGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCAAGAGAAAGAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTATTCTCGATCTCCACCGCCACGCCATAGATCTCGTTCTCGGAGTCGTGACTATTATTCCCCTGCCAAACGAAGGGATTATTCTAGATCTCTCTCCCCTGAGGACAGACGTTACAGTCGAGAAAGATCATATTCGCCGCAGAGTAGGGAGAGGTCATACTCACGCTCTCCAGCTTATAATGGGGGCTCGAGGAGTCGTAGTCACAGTCCTGCAAAGGGTCCAACTCGAAGCAGAAGTCCAAGTCCGGACCATGATGTTAAGGAACCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 741 0.5263 MRGRSYSPSPPRYSRRGGGRSPSPRGRYPPRPRQPDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYSGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPAKRRDYSRSLSPEDRRYSRERSYSPQSRERSYSRSPAYNGGSRSRSHSPAKGPTRSRSPSPDHDVKEPARGRSPSQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4620g00007 246 Gene3D - 31 147 IPR012677 -
Vium4620g00007 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Vium4620g00007 246 SMART rrm1_1 40 113 IPR000504 GO:0003723
Vium4620g00007 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 231 - -
Vium4620g00007 246 MobiDBLite consensus disorder prediction 160 197 - -
Vium4620g00007 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Vium4620g00007 246 MobiDBLite consensus disorder prediction 1 38 - -
Vium4620g00007 246 MobiDBLite consensus disorder prediction 119 143 - -
Vium4620g00007 246 FunFam - 4 131 - -
Vium4620g00007 246 SUPERFAMILY RNA-binding domain, RBD 35 144 IPR035979 GO:0003676
Vium4620g00007 246 MobiDBLite consensus disorder prediction 198 225 - -
Vium4620g00007 246 MobiDBLite consensus disorder prediction 119 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4620g00007 Vium-Chr4620 18926 21631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4620g00007 39 170 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 1.05e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4620g00007 K12900 - gmx:100775883 308.531