Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4620g00001 ATGGGGGAGATAGAGAGAGAGGGAGTGTTGTCGAGGGAGAAGGTAGAAGAGGAAGAAGAAGCGGAAGCCTCGGTGGAGATATGGAAGTACATATTTGGATTTGTGGAAATGGCAGTGGTGAAATGTGCGATAGAGCTTGGCATTGCTGAAGCCATAGAAAAGCATGGAAGGGCGATGACAGTGTCGGAGATATCATCAGCTCTGGGGTGTGATCCTGCTCTTCTGAAACGCATAATGAGATTCCTGGCGCACAGGAAGATATTCAAAGCCGTAACCATGGGCGGCAGCAATGGCTATACACAGACACCTCTGTCTCGTCGTTTGATGAAAGAGGGGCAACAGAGCATGGCCGCTTTACTTTTGCTGGAGAGTACTCCTATAATGCTAGCACCTTGGCACAGTCTAAGCGCTCGCGTCATGGCCAATGGCCGTCCCTCATTTCAAAACACTCACGGTGAAGACGTGTGGCGCTATGCCGCCGCCAATCTCGACCACAGCAACCTCATCAACGAAGCGATGGCATGCGATGCCAAGCTTGTCATGCCTGTCATCATCGAAAATTGCAACGAGGAATTCCGTGGTCTCAAGTCGGTGGTGGACGTGGGAGGGGGCAACGGCACTGCCATGCGCATCCTCCATCAAGCTCTCCCTTCCATTCGAGCCATCAATTTTGATCTTCCCCATGTCATCGCCCAGGCCCCTCACTCCGATGGCCTCGAACACGTGGCAGGAGACATGTTCCAGAGTGTTCCTAAAGCCGATGCTGCTTTTCTCATGTGGGTTTTGCACGACTGGTCGGACGAAGAGTGCATCGAAATCTTGAAGAAGTGTAGGGAAGGAATCTCGAAGGAAAATGGGAAGGTGATGATCGTGGAGGCGGTGATAGAAGAAGGAGAAGGAGGTAAGGTGAAGGCCCTGGAAGACGTGGGGCTGATGCTGGACATGGTGATGATGGCTCACACTAACTTTGGGAAAGAGCGGACCCTGAAAGAGTGGGAATATGTTATCAAAATGGCAGGCTTTAGCTCATACACTGTCAAACCCATTCCCGCAGTGCAGTCTGTGATTCTGGCTTACTACTGA 1083 0.5152 MGEIEREGVLSREKVEEEEEAEASVEIWKYIFGFVEMAVVKCAIELGIAEAIEKHGRAMTVSEISSALGCDPALLKRIMRFLAHRKIFKAVTMGGSNGYTQTPLSRRLMKEGQQSMAALLLLESTPIMLAPWHSLSARVMANGRPSFQNTHGEDVWRYAAANLDHSNLINEAMACDAKLVMPVIIENCNEEFRGLKSVVDVGGGNGTAMRILHQALPSIRAINFDLPHVIAQAPHSDGLEHVAGDMFQSVPKADAAFLMWVLHDWSDEECIEILKKCREGISKENGKVMIVEAVIEEGEGGKVKALEDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSSYTVKPIPAVQSVILAYY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4620g00001 360 Gene3D - 10 108 IPR036388 -
Vium4620g00001 360 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Vium4620g00001 360 Gene3D Vaccinia Virus protein VP39 109 359 IPR029063 -
Vium4620g00001 360 FunFam O-methyltransferase family protein 11 108 - -
Vium4620g00001 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 360 IPR016461 GO:0008168
Vium4620g00001 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 358 IPR029063 -
Vium4620g00001 360 FunFam O-methyltransferase family protein 110 359 - -
Vium4620g00001 360 SUPERFAMILY "Winged helix" DNA-binding domain 17 111 IPR036390 -
Vium4620g00001 360 PIRSF O-mtase 7 360 IPR016461 GO:0008168
Vium4620g00001 360 PANTHER O-METHYLTRANSFERASE 37 343 IPR016461 GO:0008168
Vium4620g00001 360 Pfam O-methyltransferase domain 132 342 IPR001077 GO:0008171
Vium4620g00001 360 CDD AdoMet_MTases 198 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4620g00001 Vium-Chr4620 4670 5932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4620g00001 40 346 Monolignol Biosynthesis Gene Families AT5G54160 36.278 1.53e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4620g00001 K22588 - gmx:100782951 531.561