Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4615g00007 ATGAAGAATGCCAAGGGCAAGGGGGCAGTGAAGGTCTCAAAAGAAGCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGAGGAAGGCTCCTAGTAAGCCTGACAAGGGCAGTGCACCAAAGGCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCAAACAAGCCTAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGACAGACCTTTAAGGCTGAGAATCCAAATGTGAAGGCTGTATCTGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCTTTATCCAGTGCTGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTCATGAAAGCTTATGATAAAAAGCAGGCAAGCTCTGCAGATGATGATGAATCAGACAAGTCCAAATCTGAGGTGAACGATGAAGATGATGAAGCCAGTGCAGAGGACCATCAAGAGGAGGAAGAGGAGGAAGACGATGAAGATGAGGAAGACGAGGATGATGACTGA 522 0.4598 MKNAKGKGAVKVSKEALKPVDDRKVGKRKAPSKPDKGSAPKAKKEKKAKKDPNKPKRPPSAFFVFLEEFRQTFKAENPNVKAVSAVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLMKAYDKKQASSADDDESDKSKSEVNDEDDEASAEDHQEEEEEEDDEDEEDEDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4615g00007 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Vium4615g00007 173 SUPERFAMILY HMG-box 40 124 IPR036910 -
Vium4615g00007 173 SMART hmgende2 54 125 IPR009071 -
Vium4615g00007 173 MobiDBLite consensus disorder prediction 139 173 - -
Vium4615g00007 173 Gene3D High mobility group box domain 38 140 IPR036910 -
Vium4615g00007 173 CDD HMG-box_AtHMGB1-like 56 116 - -
Vium4615g00007 173 MobiDBLite consensus disorder prediction 1 59 - -
Vium4615g00007 173 MobiDBLite consensus disorder prediction 8 56 - -
Vium4615g00007 173 MobiDBLite consensus disorder prediction 105 138 - -
Vium4615g00007 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 158 IPR031061 -
Vium4615g00007 173 MobiDBLite consensus disorder prediction 87 173 - -
Vium4615g00007 173 Pfam HMG (high mobility group) box 55 123 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4615g00007 Vium-Chr4615 55133 58362 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium4615g00007 HMG_box 1.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4615g00007 K25507 - gmx:100499704 170.629