Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4615g00004 ATGGCCACCGCAACGGCTACGGCAGCGGCAACGTCCTCATTCATGGGGACGCGCCTCCTGGACGCGCATTCCGGGTCAGGGCGGATCCAGGCACGATTCGGGTTCGGGTCGAAGAAGAAGGCCGCGCCCAAGAAGGTGTCGAAGGGTCCAGGCACGGACAGGCCGTTGTGGTACCCCGGCGCGAAGGCACCGGAGTGGCTGGACGGGAGCCTTGTCGGTGACTACGGGTTCGACCCGTTCGGGCTCGGGAAGCCCGCGGAGTATTTGCAGTTTGAACTGGACTCGCTGGACCAGAACCTGGCCAAGAACGAGGCCGGGATCATCATCGGAACCAGGACAGAAGCAGCGGACGTGAAGTCGACGCCGTTCCAGCCCTACAGCGAGGTCTTCGGCCTCCAGAGGTTCCGCGAGTGCGAGCTCATCCATGGACGCTGGGCCATGCTCGCCACGCTCGGAGCCCTCTCCGTCGAGTGGCTCACCGGTGTCACGTGGCAGGACGCCGGCAAGGTGGAGCTAGTAGAAGGATCATCATACCTTGGGCAACCACTTCCGTTCTCAATCACCACATTGATTTGGATCGAGGTTCTGGTAATTGGGTACATAGAGTTCCAGAGGAATGCAGAGCTTGACCCAGAAAAGAGACTGTACCCAGGTGGGAGCTACTTCGACCCTCTTGGTTTGGCCTCAGACCCAGAGAAGAAAGCCACTCTTCAATTGGCAGAGATCAAGCACGCACGTCTTGCCATGGTGGGCTTCTTGGGCTTTGCAGTCCAAGCTGCTGCCACTGGCAAGGGCCCACTCAACAACTGGGCTACCCACTTGAGTGACCCACTTCACACAACCATCATTGACACCTTCTCCTCGTCTTCTTAA 873 0.5945 MATATATAAATSSFMGTRLLDAHSGSGRIQARFGFGSKKKAAPKKVSKGPGTDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4615g00004 290 Pfam Chlorophyll A-B binding protein 63 259 IPR022796 -
Vium4615g00004 290 SUPERFAMILY Chlorophyll a-b binding protein 51 287 - -
Vium4615g00004 290 FunFam Chlorophyll a-b binding protein, chloroplastic 111 288 - -
Vium4615g00004 290 Gene3D Chlorophyll a/b binding protein domain 57 290 - -
Vium4615g00004 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 285 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4615g00004 Vium-Chr4615 41652 43559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4615g00004 15 289 Chloroplast and Mitochondria Gene Families AT3G08940 86.594 3.80e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4615g00004 K08915 - gmx:100785180 543.888