Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4614g00006 GTCTGTCCCGACTGCGACTGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCACCTCGACCCTCGCCGTCATCGCTTCCCTGCTGCTGCCATGTACATGATCGGCCATCGCCCTGCCTCCGACAACGCTGTCCGTCCCTTCCTGCGCCGCACCCGCCACAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGCTACCAGCGAGGAGGAAAGTCGAGGCTTTGAGCTCTTCTACGACAATGGTGCCGGTTCTGGCTTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATTTGGATTCGATAGGCTTCTGGAGCAACTGACTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAGCCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACTGCGATGAGGGAAATGTCGTGTAAGCATATATATCACCCTGAATGCATCTTACCATGGCTAGCTTCGAAGGTTTTCAATTTGGGGTGA 609 0.5435 VCPDCDCGFIEEIEHPPRSVHLDPRRHRFPAAAMYMIGHRPASDNAVRPFLRRTRHNGGDRSPFNPVIVLRGSAAATSATSEEESRGFELFYDNGAGSGLRPLPPSMSEFLLGFGFDRLLEQLTQIEINGIGRYEHPPASKAAIDSLPTIEIDNTHLAMESHCAVCKEAFELGTAMREMSCKHIYHPECILPWLASKVFNLG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4614g00006 202 Pfam Ring finger domain 162 196 IPR001841 -
Vium4614g00006 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 198 IPR013083 -
Vium4614g00006 202 SUPERFAMILY RING/U-box 143 197 - -
Vium4614g00006 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4614g00006 Vium-Chr4614 63056 63664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4614g00006 102 197 C3H Transcription Factor Family AT5G01980 36.458 2.20e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4614g00006 K11982 - gmx:100807324 347.821