Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4614g00002 ATGAGAATTCCACTAATAGCCTCTCTTGTGGCTGCGTCGTTGTTGCTATTGTCGTTCGTCATCGGATTCATAATCTTCCGATGCGTAAGAAGAGTTAACTCCGACAGAGATAGCAACTCGGAGTCTTCAAGCACGCGCTGCCGCGAGTTTTCTCTGGCGGAGATAAGAGCAGCCACCAGCAACTTCGAAGAGCGTTTAATCGTGGGCAGAGGAGGGTTCGGGAACGTGTACAAGGGGCACATCGACAGGAGTCACAAGCCCGTGGCCATCAAGCGGCTCAAACCGGGTTCGGACCAGGGCGCACACGAGTTCCAAACCGAGATCAAGATGCTCTCACGATTCCGCCACGAGCACTTGGTTTCCCTCATTGGGTACTGCAACGACGGTAGAGAAATGATACTCGTCTATGATTTCATGGCGCGTGGGACCCTCCGCGACCACTTGTACGGCTCAGGCGAGGTGCTGTCGTGGAAGCGGCGACTGAAGATCTGCCTGGAGGCCGCACGTGGGCTTGAGTTCCTCCACGCAGGCGTGGGCCGGCAGAGCGTAATCCACCGTGACGTGAAGAGCACAAACATCCTGCTGGACGAGAATTGGGTGGCGAAGGTGTCGGATTTCGGGTTGTCAAAGGTGGGATCGAACGCGTCGCACGTGACAACAGACGTTAAGGGTAGTGTGGGATACTTGGATCCTGAGTACTATATGAGTCTTTGGTTGACTCATAAATCCGACGTCTACTCCTTTGGCGTGATTTTGCTTGAGGCATTGTGTGGGAGAGCACCTATAGTGAGCAGGGTGGAGAAGGATCAAGAGTGTTTGGTGGCGTGGGTGAAGCGGTGTTTTGACGATGGGAATGTTCATGAGACGGTGGATCCGGTTTTGAAAGGTAGCATACGCTCCAAGTGTTTGAATAAGTTCGTGGAGATTGCTCTGAGTTGTTTGAATGATCATGGCAAGGACCGGCCTCTGATGAGAGACGTGGTGAAGGGGTTGGAGTATGCGTTGAATTTGCAATGCCGCTTGGCGCAAGGTGAACGGGAAATTGGCTTGACAGAAATGGAGCGTCATGGCGAATTTGACGAAAAATTTGCTTCTTCCAGTAGTAAAGCTACGACGACATGCAGTGAGGAGGAGCAAGCTTTGGTGCATGTCATGTTCTCTGACCTTGGAAATCAAAGGCCACGGTAA 1188 0.5236 MRIPLIASLVAASLLLLSFVIGFIIFRCVRRVNSDRDSNSESSSTRCREFSLAEIRAATSNFEERLIVGRGGFGNVYKGHIDRSHKPVAIKRLKPGSDQGAHEFQTEIKMLSRFRHEHLVSLIGYCNDGREMILVYDFMARGTLRDHLYGSGEVLSWKRRLKICLEAARGLEFLHAGVGRQSVIHRDVKSTNILLDENWVAKVSDFGLSKVGSNASHVTTDVKGSVGYLDPEYYMSLWLTHKSDVYSFGVILLEALCGRAPIVSRVEKDQECLVAWVKRCFDDGNVHETVDPVLKGSIRSKCLNKFVEIALSCLNDHGKDRPLMRDVVKGLEYALNLQCRLAQGEREIGLTEMERHGEFDEKFASSSSKATTTCSEEEQALVHVMFSDLGNQRPR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4614g00002 395 Gene3D Phosphorylase Kinase; domain 1 32 138 - -
Vium4614g00002 395 FunFam Receptor-like protein kinase FERONIA 34 138 - -
Vium4614g00002 395 PANTHER OS07G0166700 PROTEIN 46 338 IPR045272 GO:0004714|GO:0006468
Vium4614g00002 395 ProSiteProfiles Protein kinase domain profile. 62 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4614g00002 395 Pfam Protein tyrosine and serine/threonine kinase 68 330 IPR001245 GO:0004672|GO:0006468
Vium4614g00002 395 CDD STKc_IRAK 68 332 - -
Vium4614g00002 395 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Vium4614g00002 395 Gene3D Transferase(Phosphotransferase) domain 1 139 348 - -
Vium4614g00002 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vium4614g00002 395 SUPERFAMILY Protein kinase-like (PK-like) 44 329 IPR011009 -
Vium4614g00002 395 FunFam Receptor-like protein kinase FERONIA 139 352 - -
Vium4614g00002 395 SMART serkin_6 62 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4614g00002 Vium-Chr4614 28993 30784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4614g00002 31 338 Receptor kinase-like Gene Family AT3G51550 56.270 2.13e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium4614g00002 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4614g00002 - - gmx:100792589 570.466