Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00042 ATGGGGAATGATGAGGTTGTGTTGGTGGATTTCAATCTGAGTATGTTCTGTGTAAGAGTGAAGATTGCTTTAGCAGAGAAAGGTGTTGAGTTTGAGAACAGGGAAGAGGATCTGGAGAACACAAAGAGTGAACTGCTTCTGCAAATGAATCCTGTTTACAAAAAGGTTCCTGTTCTTATCCACAATGGTAAGCCAATCTCAGAATCTCTGATAATTGTTGAATATATTGATGAGATTTGGAGTGATAGGACTCCTCTTTTGCCCACTCATCCCTATCAGAGAGCTCAAGCAAGGTTCTGGGCTCATTTTGTTGACCATAAGGTGCATGAAGTTGCAAAGAGGATGTGGACTGGGAAGAGAGGTGAACATGAGGAAGATAAGAAGGAGTTAGTAGAGAATTTGAAGCAATTGGAAGAGGCTCTTGGGGACATGCCATATTTTGGAGGTCAGACATTTGGGTTTGTTGATATTGCTCTCATTCCCTTTTACAAATGGTTCTCTATTTATGAGAAAATTGGGAACTTCAAGCTCAACTGTCCAAAACTCACTTCTTGGGCAAACAGATGTTTGGTCAAACAAACTGTCTCCAAATTTGTTTCTGATGAGAAGGATGTCTATGACTTTGTTATCAGATATAGGAAAACAATTGGGGTGGACTGA 660 0.403 MGNDEVVLVDFNLSMFCVRVKIALAEKGVEFENREEDLENTKSELLLQMNPVYKKVPVLIHNGKPISESLIIVEYIDEIWSDRTPLLPTHPYQRAQARFWAHFVDHKVHEVAKRMWTGKRGEHEEDKKELVENLKQLEEALGDMPYFGGQTFGFVDIALIPFYKWFSIYEKIGNFKLNCPKLTSWANRCLVKQTVSKFVSDEKDVYDFVIRYRKTIGVD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00042 219 CDD GST_N_Tau 6 80 - -
Vium4613g00042 219 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Vium4613g00042 219 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Vium4613g00042 219 Gene3D - 90 219 - -
Vium4613g00042 219 SFLD Main (cytGST) 2 216 - -
Vium4613g00042 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 208 IPR010987 -
Vium4613g00042 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 84 IPR004045 -
Vium4613g00042 219 Coils Coil 120 140 - -
Vium4613g00042 219 CDD GST_C_Tau 91 209 IPR045074 GO:0004364|GO:0006749
Vium4613g00042 219 Gene3D Glutaredoxin 2 89 - -
Vium4613g00042 219 FunFam Glutathione S-transferase U20 90 219 - -
Vium4613g00042 219 Pfam Glutathione S-transferase, C-terminal domain 123 185 - -
Vium4613g00042 219 FunFam Tau class glutathione S-transferase 1 89 - -
Vium4613g00042 219 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Vium4613g00042 219 SUPERFAMILY GST C-terminal domain-like 78 216 IPR036282 -
Vium4613g00042 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 12 204 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00042 Vium-Chr4613 322445 323393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00042 4 219 Glutathione S-transferase Gene Family AT1G17180 55.963 4.91e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00042 K00799 - gmx:100781460 365.155