Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00040 ATGCAGATATTCGTGAAAACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAATCCTCCGACACCATTGATAACGTGAAAGCAAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAACATCCAAAAGGAATCCACTCTCCACCTCGTGCTTCGCCTCAGGGGTGGCATGCAAATCTTCGTCAAGACTTTGACTGGGAAAACCATTACCCTTGAGGTCGAGAGTTCAGACACCATTGATAATGTAAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTGATTTTCGCTGGGAAACAACTCGAGGATGGAAGAACCCTTGCTGATTACAATATTCAGAAGGAGTCCACCCTCCATTTGGTGCTTCGTTTGAGAGGCGGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATAACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATACCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGGGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTTGAAAGCTCTGATACCATTGATAATGTAAAGGCAAAGATTCAGGACAAAGAGGGGATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGGATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAATCCACCCTCCACCTTGTTCTTCGCCTTCGCGGTGGCTTCTAAATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTCGAGGTGGAATCCTCCGATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAGCAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAACATTCAAAAGGAGTCCACTCTCCACTTGGTTCTTCGTTTGAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATCTTTGCTGGGAAACAGCTTGAAGATGGAAGAACCCTTGCAGATTATAATATCCAGAAGGAGTCTACTTTGCACTTGGTTTTGAGGCTTCGAGGTGGCATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACCATTACCTTGGAGGTTGAAAGTTCTGATACCATTGATAATGTAAAGGCTAAGATACAGGACAAAGAGGGGATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGTACCCTTGCTGATTATAACATCCAGAAGGAATCCACTCTTCATTTGGTGCTAAGGCTTCGTGGTGGAATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGGCGTACCCTTGCAGATTATAACATCCAGAAAGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTCGGATACAATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGTCGTACCTTGGCAGACTACAATATTCAGAAGGAATCTACCCTGCATCTTGTCCTTCGCCTTCGCGGTGGTTTCTAA 2520 0.4583 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFXMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00040 839 CDD Ubl_ubiquitin 305 380 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 763 838 - -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 561 586 IPR019954 -
Vium4613g00040 839 SMART ubq_7 229 300 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 611 682 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 305 376 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 687 758 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 1 72 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 459 530 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 381 452 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 763 834 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 77 148 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 153 224 IPR000626 GO:0005515
Vium4613g00040 839 SMART ubq_7 535 606 IPR000626 GO:0005515
Vium4613g00040 839 FunFam Polyubiquitin 3 535 610 - -
Vium4613g00040 839 FunFam Polyubiquitin 3 763 838 - -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 459 534 IPR029071 -
Vium4613g00040 839 CDD Ubl_ubiquitin 1 76 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 535 610 - -
Vium4613g00040 839 FunFam Polyubiquitin 3 305 380 - -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vium4613g00040 839 FunFam Polyubiquitin 3 611 686 - -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Vium4613g00040 839 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 537 608 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 765 836 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 613 684 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 461 532 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 383 454 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Vium4613g00040 839 Pfam Ubiquitin family 689 760 IPR000626 GO:0005515
Vium4613g00040 839 FunFam Polyubiquitin 3 1 76 - -
Vium4613g00040 839 FunFam Polyubiquitin 3 229 304 - -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 485 510 IPR019954 -
Vium4613g00040 839 FunFam Polyubiquitin 3 687 762 - -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 762 838 IPR029071 -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 611 686 IPR029071 -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 686 762 IPR029071 -
Vium4613g00040 839 CDD Ubl_ubiquitin 459 534 - -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 687 762 IPR000626 GO:0005515
Vium4613g00040 839 FunFam Polyubiquitin 3 77 152 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 229 304 - -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 713 738 IPR019954 -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 459 534 IPR000626 GO:0005515
Vium4613g00040 839 FunFam Polyubiquitin 3 153 228 - -
Vium4613g00040 839 FunFam Polyubiquitin 3 381 456 - -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 611 686 IPR000626 GO:0005515
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 535 610 IPR000626 GO:0005515
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 407 432 IPR019954 -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 381 456 IPR000626 GO:0005515
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 379 456 IPR029071 -
Vium4613g00040 839 CDD Ubl_ubiquitin 153 228 - -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 789 814 IPR019954 -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vium4613g00040 839 FunFam Polyubiquitin 3 459 534 - -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vium4613g00040 839 CDD Ubl_ubiquitin 687 762 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 381 456 - -
Vium4613g00040 839 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vium4613g00040 839 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vium4613g00040 839 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 534 610 IPR029071 -
Vium4613g00040 839 ProSitePatterns Ubiquitin domain signature. 637 662 IPR019954 -
Vium4613g00040 839 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Vium4613g00040 839 PANTHER UBIQUITIN 611 688 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 77 152 - -
Vium4613g00040 839 ProSiteProfiles Ubiquitin domain profile. 763 838 IPR000626 GO:0005515
Vium4613g00040 839 Gene3D - 77 152 - -
Vium4613g00040 839 Gene3D - 382 457 - -
Vium4613g00040 839 Gene3D - 535 610 - -
Vium4613g00040 839 Gene3D - 458 534 - -
Vium4613g00040 839 Gene3D - 611 686 - -
Vium4613g00040 839 Gene3D - 1 76 - -
Vium4613g00040 839 Gene3D - 687 762 - -
Vium4613g00040 839 Gene3D - 153 228 - -
Vium4613g00040 839 Gene3D - 305 381 - -
Vium4613g00040 839 Gene3D - 763 839 - -
Vium4613g00040 839 Gene3D - 229 304 - -
Vium4613g00040 839 CDD Ubl_ubiquitin 611 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00040 Vium-Chr4613 296132 302323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00040 763 839 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.63e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00040 K08770 - msin:131220086 1610.51